Align Putative thymidine phosphorylase; EC 2.4.2.4; TdRPase (uncharacterized)
to candidate Ac3H11_2202 Thymidine phosphorylase (EC 2.4.2.4)
Query= curated2:Q21W90 (522 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2202 Length = 535 Score = 820 bits (2117), Expect = 0.0 Identities = 409/511 (80%), Positives = 461/511 (90%) Query: 12 SKLVLRRVAIDTYRENVAYLHRDCAVYRAEGFQALSKVEVRANGRHILATLNVVDDPNIV 71 S+L LRRVAIDT+RENVAYLHRDCAVYRAEGFQALSK+EVRANGR ILAT+NVVDDP IV Sbjct: 25 SQLALRRVAIDTWRENVAYLHRDCAVYRAEGFQALSKIEVRANGRRILATVNVVDDPAIV 84 Query: 72 ACNELGLSEDAFAQMAVIDGQPASVSQAEPPQSIGALRRKLAGERLGREDFLGIVRDIAE 131 C ELGLSEDAFAQ+ V +G SV+QAEPP+S+GAL RK+A ERL REDF IVRDIA+ Sbjct: 85 GCQELGLSEDAFAQLGVDNGHTVSVAQAEPPESMGALFRKIASERLTREDFGAIVRDIAD 144 Query: 132 LHYSKIELSAFVVATNRDELDREEVYFLTEAMVASGRTLNWHEPLVVDKHCIGGIPGNRS 191 YSKIEL+AFVVA +R ELDREEV+FLT+AMVASGR L+WHEPLVVDKHCIGGIPGNR+ Sbjct: 145 HRYSKIELTAFVVACHRSELDREEVFFLTDAMVASGRRLDWHEPLVVDKHCIGGIPGNRT 204 Query: 192 SMLVVPIVAAHGLLCPKTSSRAITSPAGTADTMEVLAKVELPVDQLADIVRTHRGCLAWG 251 +MLVVPIVAAHG+LCPKTSSRAITSPAGTADTMEVLAKVELP++QLADIVR +RGCLAWG Sbjct: 205 TMLVVPIVAAHGMLCPKTSSRAITSPAGTADTMEVLAKVELPLEQLADIVRDYRGCLAWG 264 Query: 252 GAAHLSPADDVLISVERPLAIDSPGQMVASILSKKIAAGSTHLVLDIPIGPSAKVRSMPE 311 G AHLSPADDVLISVERPL+IDS GQMVASILSKK+AAG+THLVLDIPIGP+AKVRSMP+ Sbjct: 265 GTAHLSPADDVLISVERPLSIDSAGQMVASILSKKVAAGATHLVLDIPIGPTAKVRSMPD 324 Query: 312 AQRLRRLFEYVAGRMHLSLDVVVTDGRQPIGNGIGPVLEARDVMRVLENDPRAPNDLRQK 371 AQRLRRLFEYVA RM LSLDVV+TDGRQP+G G+GPVLEARDVMRVL+NDPRAP+DLRQK Sbjct: 325 AQRLRRLFEYVARRMGLSLDVVITDGRQPVGQGVGPVLEARDVMRVLQNDPRAPDDLRQK 384 Query: 372 SLRLAGRLIEFDPDVRGGDGFAIARDILDSGRALAKMNAIIAAQGAKPFDHNHPQLGALT 431 +LRLAGRLIE DPDVRGGDG+AIARDILDSGRALA+MNAIIAAQG+ FDHNHP LGALT Sbjct: 385 ALRLAGRLIECDPDVRGGDGYAIARDILDSGRALARMNAIIAAQGSTGFDHNHPALGALT 444 Query: 432 FDICASESGVVTGIDNLQVARIARLAGAPKVIGAGIDLFHKLGEAVTSGEVLYRVHAGFQ 491 D+ A SGVV+ IDN Q+A +ARLAGAPKV GAG+DL HKLG+ V +G++LYRVHA + Sbjct: 445 LDVVAPASGVVSAIDNYQIACVARLAGAPKVPGAGVDLMHKLGDTVAAGDLLYRVHASYP 504 Query: 492 SDLDFARQACAKSTGYTLGRAEDVPHVFTEF 522 +DL+FAR AC + +GY LG A++VP VF EF Sbjct: 505 ADLEFARHACERDSGYRLGTADEVPQVFVEF 535 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 971 Number of extensions: 30 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 522 Length of database: 535 Length adjustment: 35 Effective length of query: 487 Effective length of database: 500 Effective search space: 243500 Effective search space used: 243500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate Ac3H11_2202 (Thymidine phosphorylase (EC 2.4.2.4))
to HMM TIGR02645 (putative thymidine phosphorylase (EC 2.4.2.4))
../bin/blast/fastacmd -i /tmp/list.18847.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18847.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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