Align Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 (characterized)
to candidate Ac3H11_1156 Tryptophan 2,3-dioxygenase (EC 1.13.11.11)
Query= SwissProt::Q1LK00 (299 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_1156 Length = 298 Score = 398 bits (1022), Expect = e-116 Identities = 198/297 (66%), Positives = 233/297 (78%), Gaps = 4/297 (1%) Query: 7 CPMGHGAAPQNGDGGDS-GDTGNGWHGAQMDFARDMSYGDYLGLDQILSAQHPLSPDHNE 65 CP H AP N G + ++ AQ+DF++ MSYGDYL LD IL+AQ PLSP H+E Sbjct: 2 CPFSHTPAPANEAPGTALPESIVHEERAQLDFSKSMSYGDYLQLDAILTAQKPLSPAHDE 61 Query: 66 MLFIVQHQTTELWMKLMLHELRAARDGVKSDQL---QPAFKMLARVSRIMDQLVQAWNVL 122 MLFIVQHQT+ELWMKLMLHELRAA D + + AFKMLARVSRIM+QLV AW+VL Sbjct: 62 MLFIVQHQTSELWMKLMLHELRAAIDRIANPDTGTRAEAFKMLARVSRIMEQLVSAWSVL 121 Query: 123 ATMTPPEYSAMRPYLGASSGFQSYQYREIEFILGNKNAAMLRPHAHRPEHLELVETALHT 182 ATMTPPEY+AMRPYL +SSGFQSYQYR IEF LGNKNAAML+PH HRP+ L V +A T Sbjct: 122 ATMTPPEYTAMRPYLASSSGFQSYQYRAIEFSLGNKNAAMLKPHEHRPDLLAQVRSAYET 181 Query: 183 PSMYDEAIRLMARRGFQIDPEVVERDWTQPTQYNASVEAAWLEVYRNPSAHWELYELGEK 242 PS+YD +++L+A+ G I +ERDWTQP + +V+ AWL VYR+P +W+LY+LGEK Sbjct: 182 PSLYDVSLQLLAKEGLHIPASHLERDWTQPYMESEAVKEAWLAVYRDPQKYWDLYQLGEK 241 Query: 243 FVDLEDAFRQWRFRHVTTVERVIGFKRGTGGTEGVSYLRRMLDVVLFPELWKLRTDL 299 D+EDAFR WRFRHVTTVERVIGFKRGTGGT GVSYLR+MLDVVLFPE+WKLRTDL Sbjct: 242 LTDIEDAFRLWRFRHVTTVERVIGFKRGTGGTGGVSYLRKMLDVVLFPEIWKLRTDL 298 Lambda K H 0.321 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 356 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 299 Length of database: 298 Length adjustment: 27 Effective length of query: 272 Effective length of database: 271 Effective search space: 73712 Effective search space used: 73712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Ac3H11_1156 (Tryptophan 2,3-dioxygenase (EC 1.13.11.11))
to HMM TIGR03036 (kynA: tryptophan 2,3-dioxygenase (EC 1.13.11.11))
../bin/blast/fastacmd -i /tmp/list.10272.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10272.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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