GapMind for catabolism of small carbon sources

 

Alignments for a candidate for maiA in Acidovorax sp. GW101-3H11

Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate Ac3H11_2306 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18)

Query= reanno::acidovorax_3H11:Ac3H11_2306
         (222 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_2306
          Length = 222

 Score =  451 bits (1161), Expect = e-132
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MQLYNYFRSSASFRVRIALQIKGLAYDYLPVHLVKGEHKAPEYASRIGDALVPTLVTDGG 60
           MQLYNYFRSSASFRVRIALQIKGLAYDYLPVHLVKGEHKAPEYASRIGDALVPTLVTDGG
Sbjct: 1   MQLYNYFRSSASFRVRIALQIKGLAYDYLPVHLVKGEHKAPEYASRIGDALVPTLVTDGG 60

Query: 61  TALSQSMAIIEYLDETHPTPALLPATPLARARVRALAQMVACEIHPINNLRVLKYLVRDL 120
           TALSQSMAIIEYLDETHPTPALLPATPLARARVRALAQMVACEIHPINNLRVLKYLVRDL
Sbjct: 61  TALSQSMAIIEYLDETHPTPALLPATPLARARVRALAQMVACEIHPINNLRVLKYLVRDL 120

Query: 121 KVDEDAKNAWYRHWVRSGLEAFERQFALLAQERAAQGLAPSVLCWGDTPTLADCCLVPQI 180
           KVDEDAKNAWYRHWVRSGLEAFERQFALLAQERAAQGLAPSVLCWGDTPTLADCCLVPQI
Sbjct: 121 KVDEDAKNAWYRHWVRSGLEAFERQFALLAQERAAQGLAPSVLCWGDTPTLADCCLVPQI 180

Query: 181 FNGQRFNVNLDGLPLTMGAFEACMALPAFQQAQPSACPDFEA 222
           FNGQRFNVNLDGLPLTMGAFEACMALPAFQQAQPSACPDFEA
Sbjct: 181 FNGQRFNVNLDGLPLTMGAFEACMALPAFQQAQPSACPDFEA 222


Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 297
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 222
Length adjustment: 22
Effective length of query: 200
Effective length of database: 200
Effective search space:    40000
Effective search space used:    40000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)

Align candidate Ac3H11_2306 (Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18))
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.30270.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30270.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.