Align N-carbamoylputrescine amidase; Nitrilase-like protein 1; EC 3.5.1.53 (characterized)
to candidate AZOBR_RS08170 AZOBR_RS08170 carbon-nitrogen family hydrolase
Query= SwissProt::Q8VYF5 (299 letters) >FitnessBrowser__azobra:AZOBR_RS08170 Length = 298 Score = 405 bits (1041), Expect = e-118 Identities = 198/290 (68%), Positives = 232/290 (80%), Gaps = 4/290 (1%) Query: 8 REVVVSSLQFACSDDISTNVAAAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFKR 67 R V V++ Q AC D NV ERLVR+A A+GA IIL QELFE YFC+ Q++D F Sbjct: 7 RTVTVAATQMACGWDRDANVNGVERLVRDAAARGAQIILPQELFETPYFCKDQKQDLFAL 66 Query: 68 AKPYKNHPTIARMQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPD 127 A P ++HP IARM LA+EL VVIP SFFE A A+YNS+A+IDADGT LG+YRKSHIPD Sbjct: 67 AHPVEDHPVIARMSALARELSVVIPTSFFERARNAYYNSLAMIDADGTVLGVYRKSHIPD 126 Query: 128 GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGS 187 GPGYQEK+YFNPGDTGF+V++T++A IG AICWDQWFPE+ARAM L+GAEILFYPTAIGS Sbjct: 127 GPGYQEKYYFNPGDTGFQVYKTRYAAIGCAICWDQWFPESARAMALKGAEILFYPTAIGS 186 Query: 188 EPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGPSQITFYGTSFIAGPT 247 EPQD LDS+ HW RVMQGHAGAN++PLVASNRIG+E E ITFYG+SFIAGPT Sbjct: 187 EPQDGALDSQAHWTRVMQGHAGANLMPLVASNRIGRE----EGDTCGITFYGSSFIAGPT 242 Query: 248 GEIVAEADDKSEAVLVAQFDLDMIKSKRQSWGVFRDRRPDLYKVLLTMDG 297 GE+VA+AD SE VL A FDLD I ++R SWG+FRDRRP+LY LLT+DG Sbjct: 243 GELVAQADRDSETVLTASFDLDRIAAQRASWGIFRDRRPELYGPLLTLDG 292 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 340 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 299 Length of database: 298 Length adjustment: 27 Effective length of query: 272 Effective length of database: 271 Effective search space: 73712 Effective search space used: 73712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate AZOBR_RS08170 AZOBR_RS08170 (carbon-nitrogen family hydrolase)
to HMM TIGR03381 (aguB: N-carbamoylputrescine amidase (EC 3.5.1.53))
../bin/blast/fastacmd -i /tmp/list.6824.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6824.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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