Align 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) (characterized)
to candidate AZOBR_RS19630 AZOBR_RS19630 4-aminobutyrate aminotransferase
Query= BRENDA::Q0K2K2 (423 letters) >FitnessBrowser__azobra:AZOBR_RS19630 Length = 428 Score = 541 bits (1395), Expect = e-158 Identities = 269/424 (63%), Positives = 325/424 (76%), Gaps = 3/424 (0%) Query: 3 MKNLELNQRRTLATPRGVGVMCDFYADRAENATLWDVEGRAYTDFAAGIAVLNTGHRHPR 62 M N RR A PRG+ Y DRAENA LWDVEG + DFA GIAVLNTGHRHP+ Sbjct: 1 MSNQSFQDRRNAAVPRGLANAMPVYVDRAENAELWDVEGNRFIDFAGGIAVLNTGHRHPK 60 Query: 63 VMQAIAAQLERFTHTAYQIVPYQGYVTLAERINALVPIQGLNKTALFTTGAEAVENAIKI 122 +++A+ AQL+RFTHT + PY+ +VTLAER+NALVP KTA FTTGAEAVENA+KI Sbjct: 61 IIEAVKAQLDRFTHTCAMVTPYESFVTLAERLNALVPGSTPKKTAFFTTGAEAVENAVKI 120 Query: 123 ARAHTGRPGVIAFSGAFHGRTLLGMALTGKVAPYKIGFGPFPSDIYHAPFPSALHGVSTE 182 ARAHTGRPGVIAFSGAFHGRTLL MALTGKV PYK+GFGPFP+++YHAPFP+A GVS + Sbjct: 121 ARAHTGRPGVIAFSGAFHGRTLLAMALTGKVVPYKVGFGPFPAEVYHAPFPNAYRGVSVQ 180 Query: 183 RALQALEGLFKTDIDPARVAAIIVEPVQGEGGFQAAPADFMRGLRAVCDQHGIVLIADEV 242 +L+ALE LFK+D+D RVAAIIVEPVQGEGGF AP +F++ LR +CD++GI+LI DE+ Sbjct: 181 DSLKALEQLFKSDVDATRVAAIIVEPVQGEGGFNIAPPEFLQALRKICDENGILLIIDEI 240 Query: 243 QTGFGRTGKMFAMSHHDVEPDLITMAKSLAGGMPLSAVSGRAAIMDAPLPGGLGGTYAGN 302 QTGF RTGKMFA+ H VEPDL+TMAKSLAGG PLSAV+G+A IMDAP+PGG+GGTYAG+ Sbjct: 241 QTGFARTGKMFAIEHSGVEPDLMTMAKSLAGGFPLSAVTGKAEIMDAPIPGGIGGTYAGS 300 Query: 303 PLAVAAAHAVIDVIEEEKLCERSASLGQQL--REHLLAQRKHCPAMAEVRGLGSMVAAEF 360 PLA AA AV+DVIEEEKL +RS LG+++ R +AQR + +VR LG M+A E Sbjct: 301 PLATTAALAVLDVIEEEKLIQRSNDLGERIAGRFRTMAQRNTLSVIGDVRNLGGMIAMEL 360 Query: 361 C-DPATGQPSAEHAKRVQTRALEAGLVLLTCGTYGNVIRFLYPLTIPQAQFDAALAVLTQ 419 D T +P+AE K + +A E GLVLL+CGTYGNVIR L PLT A D L ++ + Sbjct: 361 VKDRGTKEPAAELTKALVAKAAEKGLVLLSCGTYGNVIRILVPLTASDALVDEGLDIIER 420 Query: 420 ALAE 423 +L E Sbjct: 421 SLEE 424 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 587 Number of extensions: 18 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 423 Length of database: 428 Length adjustment: 32 Effective length of query: 391 Effective length of database: 396 Effective search space: 154836 Effective search space used: 154836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.3 bits)
Align candidate AZOBR_RS19630 AZOBR_RS19630 (4-aminobutyrate aminotransferase)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.24689.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24689.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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