Align agmatinase (EC 3.5.3.11) (characterized)
to candidate AZOBR_RS30775 AZOBR_RS30775 agmatinase
Query= BRENDA::W5PHZ9 (361 letters) >FitnessBrowser__azobra:AZOBR_RS30775 Length = 351 Score = 244 bits (624), Expect = 2e-69 Identities = 137/318 (43%), Positives = 197/318 (61%), Gaps = 19/318 (5%) Query: 44 QASDGPRNQPPSSEFVARSVGICSMMRLPMQ------ATPEGLDAALVGVPLDIGTSNRP 97 Q S G R QP G+ +++ P + A GLD AL+GVP+D+G +NR Sbjct: 34 QFSGGKRVQP--------FAGVSTLLDAPYRPDAADAADFGGLDIALIGVPMDLGVTNRA 85 Query: 98 GARFGPRRIREESVMLRTANPSTGAVPFQFLKVADLGDVNVNLYNLQDSCRL-IRADYQK 156 GAR GPR +R + + VP K+AD+GDV ++ ++C I A Y + Sbjct: 86 GARLGPRAVRGME-RIGPYEHALRMVPAASCKLADVGDVPLSSRFSLEACHGDILAFYNR 144 Query: 157 IVAAGCVPLTLGGDHTITYPILQAIAEKHGPVGLVHVDAHMDTADKALGEKLYHGTPFRR 216 ++ AG VPL++GGDH+ITY IL+A+ + PVG++H DAH DT G K +HG PFR+ Sbjct: 145 VMDAGVVPLSVGGDHSITYSILKALGRER-PVGMIHFDAHCDTGGPYEGAKFHHGGPFRQ 203 Query: 217 CVDEGLLDCKRVVQIGIRGSSTTLDTYRYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMG 276 V +G+LD +R VQIGIRGS+ L + +S G V+ AED + + ++ R+ +G Sbjct: 204 AVLDGVLDPERTVQIGIRGSTEYL--WEFSYDSGMTVIHAEDIPERGIASVIETARKVVG 261 Query: 277 GRPIYISFDIDGLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDP 336 P+Y+SFD+D LDP +APGTGTPE+ GLT +AL I+RG GL+++G D+VEV+P YD Sbjct: 262 DGPVYVSFDVDCLDPVFAPGTGTPEVGGLTTREALAILRGLDGLDIIGGDVVEVAPQYDA 321 Query: 337 SGNTALVAANLLFEMLCV 354 + NTA A +LFE+LC+ Sbjct: 322 TTNTAHAGAQMLFEILCL 339 Lambda K H 0.321 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 444 Number of extensions: 27 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 361 Length of database: 351 Length adjustment: 29 Effective length of query: 332 Effective length of database: 322 Effective search space: 106904 Effective search space used: 106904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate AZOBR_RS30775 AZOBR_RS30775 (agmatinase)
to HMM TIGR01230 (speB: agmatinase (EC 3.5.3.11))
../bin/blast/fastacmd -i /tmp/list.12629.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12629.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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