Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate AZOBR_RS30840 AZOBR_RS30840 hypothetical protein
Query= reanno::psRCH2:GFF3290 (312 letters) >FitnessBrowser__azobra:AZOBR_RS30840 Length = 323 Score = 209 bits (531), Expect = 9e-59 Identities = 128/313 (40%), Positives = 175/313 (55%), Gaps = 6/313 (1%) Query: 4 VLTVTLNPALDLTVQLPALRLGEVNRSDSLQVHAAGKGLNVAQVLADLG-----HQLTVT 58 V+TVTLN A+D T+ +P G VNR+ + A GKG+NVA LA +T T Sbjct: 11 VVTVTLNAAIDQTLDVPGFAAGAVNRAVAETRTAGGKGINVAAFLAGASLAGGATPVTAT 70 Query: 59 GFLGEGNPQAFEQLFSARGFTDEFVRVAGETRSNLKLAEADGR-VTDINGPGLAVSEAQR 117 GFLGE N F+ LF RG D +R+AG +R N+KL + +G VTDIN PGL V Sbjct: 71 GFLGEENTAVFDALFRRRGIRDRCLRLAGRSRVNIKLVDREGHSVTDINLPGLHVPAESW 130 Query: 118 AELLARLKRLVPAHELVVVAGSLPRGIDSQWFVQLLNSLKALGVRVALDTSGAALRDGLA 177 LL + L + V++GS+P G+ + +++ +L G V +D SG LR +A Sbjct: 131 RGLLTVVDDLAVTNRTFVLSGSVPAGVPDTAYTEMVTALHRRGAFVVVDASGPPLRHAVA 190 Query: 178 TRPWLIKPNEEELAEARGIELSGSSALAAEAQRLQEEGIEHVVVSQGADGVSWFSPGAAL 237 RP ++KPN ELAE G L + + A+ L E GI VVVS GA+G + G AL Sbjct: 191 ARPDMVKPNAAELAELLGRPLKDRAEVVRAARELSESGIALVVVSLGAEGAVFVEGGRAL 250 Query: 238 HASPPKVRVVSTVGAGDSLLAGMLHGLLEGWPAERTLTHATAIAAQAVGQVGFGITDTAQ 297 A PP V V STVGAGD+++AG++ LEG E TA AA + ++G + + Sbjct: 251 LAMPPPVEVASTVGAGDAMVAGVVAARLEGMGLEDCARRGTAFAAGTLSRLGPELPPPER 310 Query: 298 LAELQAAVRLQPL 310 LAEL AVR++ L Sbjct: 311 LAELMRAVRVEEL 323 Lambda K H 0.316 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 251 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 323 Length adjustment: 27 Effective length of query: 285 Effective length of database: 296 Effective search space: 84360 Effective search space used: 84360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate AZOBR_RS30840 AZOBR_RS30840 (hypothetical protein)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.13608.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13608.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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