GapMind for catabolism of small carbon sources

 

Alignments for a candidate for fadA in Azospirillum brasilense Sp245

Align acetyl-CoA acetyltransferase (EC 2.3.1.16) (characterized)
to candidate AZOBR_RS30610 AZOBR_RS30610 acetyl-CoA acetyltransferase

Query= metacyc::MONOMER-13585
         (391 letters)



>FitnessBrowser__azobra:AZOBR_RS30610
          Length = 391

 Score =  544 bits (1402), Expect = e-159
 Identities = 269/390 (68%), Positives = 321/390 (82%)

Query: 1   MTNVVIVSAARTAVGSFNGAFASTPAHDLGAAVIEAVVARAGIDKADVSETILGQVLTAG 60
           MT VVI SAART +GSFNGA +S PAH LG   I   ++RA  D A+V+E ILGQ+LTAG
Sbjct: 1   MTEVVIASAARTPIGSFNGALSSVPAHYLGEIAIREALSRAKTDAAEVTEVILGQILTAG 60

Query: 61  QGQNPARQAHIKAGLPQESAAWSINQVCGSGLRAVALAAQHVQLGDASIVVAGGQENMSL 120
           QGQNPARQA + AG+P  + A+ INQ+CGSGLR+VAL  Q ++ GDA ++V GGQE+MS 
Sbjct: 61  QGQNPARQAAVNAGIPASATAFGINQLCGSGLRSVALGYQAIRNGDAEVMVVGGQESMSQ 120

Query: 121 SPHVAHLRAGQKMGDLSFIDSMIKDGLWDAFNGYHMGQTAENVAAKWQISRDMQDEFAVA 180
           +PHV HLR G KMG    +D+M+KDGL DAF GYHMG TAENVA KWQ++R+ QD FA A
Sbjct: 121 APHVMHLRNGVKMGAAEMLDTMLKDGLMDAFKGYHMGTTAENVAQKWQLTREEQDVFAAA 180

Query: 181 SQNKAEAAQKAGRFADEIVPFVIKTRKGDVTVDADEYIRHGATLDAMAKLRPAFIKDGTV 240
           SQ KAEAAQK+GRF DEI+P  IK RKGD+ V  DEY +HG T +++AKLRPAF K+GTV
Sbjct: 181 SQQKAEAAQKSGRFKDEIIPVTIKGRKGDIIVADDEYPKHGTTAESLAKLRPAFSKEGTV 240

Query: 241 TAANASGINDGAAAVLVMSAEEAEKRGLSPLARIASYATAGLDPSIMGVGPIHASRKALE 300
           TA NASGINDGAAA+++M+AE A +RGL+PLARI S+ATAG+DP+IMG GPI ASR ALE
Sbjct: 241 TAGNASGINDGAAALVLMTAENAARRGLTPLARIVSWATAGVDPAIMGTGPIPASRLALE 300

Query: 301 KAGWKVGDLDLVEANEAFAAQACAVNKDMGWDPSIVNVNGGAIAIGHPIGASGARVLNTL 360
           KAGWK  DLDL+EANEAFAAQA AVNKD+GWD S VNVNGGAIA+GHP+GASGARVL TL
Sbjct: 301 KAGWKHDDLDLIEANEAFAAQALAVNKDLGWDTSKVNVNGGAIALGHPVGASGARVLTTL 360

Query: 361 LFEMQRRNAKKGLATLCIGGGMGVAMCLER 390
           L+EMQ+R+AKKGLATLCIGGGMG+A+ +ER
Sbjct: 361 LYEMQKRDAKKGLATLCIGGGMGIALTVER 390


Lambda     K      H
   0.317    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 461
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 391
Length adjustment: 31
Effective length of query: 360
Effective length of database: 360
Effective search space:   129600
Effective search space used:   129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS30610 AZOBR_RS30610 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.16641.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16641.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.