GapMind for catabolism of small carbon sources

 

Alignments for a candidate for gloA in Azospirillum brasilense Sp245

Align lactoylglutathione lyase (EC 4.4.1.5) (characterized)
to candidate AZOBR_RS29310 AZOBR_RS29310 glyoxalase I

Query= BRENDA::P0A0T3
         (138 letters)



>FitnessBrowser__azobra:AZOBR_RS29310
          Length = 141

 Score =  123 bits (308), Expect = 1e-33
 Identities = 60/133 (45%), Positives = 90/133 (67%), Gaps = 7/133 (5%)

Query: 1   MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETD-----STVL 55
           ++LLH MLRV ++E+SLDFY  +LGM++++++++ + +FT A+VGYG   D     + V+
Sbjct: 6   IKLLHAMLRVSDMERSLDFYTRLLGMRVIQQREHKKNQFTQAYVGYGTAEDPLDSPAMVI 65

Query: 56  ELTHNWDTE-RYDLGNAYGHIAVEVDDAYEA-CERVKRQGGNVVREAGPMKHGTTVIAFV 113
           EL  NW  E  Y  G+A+GHIA+ V     A CER+  +G  V R   P KHG  ++AF+
Sbjct: 66  ELVANWTQEVPYSQGSAFGHIAIGVPSGIGALCERLAAEGVPVPRPPKPQKHGDNIVAFI 125

Query: 114 EDPDGYKIEFIQK 126
           EDPDGY+IE +Q+
Sbjct: 126 EDPDGYRIELVQR 138


Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 141
Length adjustment: 15
Effective length of query: 123
Effective length of database: 126
Effective search space:    15498
Effective search space used:    15498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)

Align candidate AZOBR_RS29310 AZOBR_RS29310 (glyoxalase I)
to HMM TIGR00068 (gloA: lactoylglutathione lyase (EC 4.4.1.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31462.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.