Align Carbamate kinase; EC 2.7.2.2 (characterized, see rationale)
to candidate GFF269 Psest_0270 carbamate kinase
Query= uniprot:P13982 (310 letters) >FitnessBrowser__psRCH2:GFF269 Length = 307 Score = 482 bits (1241), Expect = e-141 Identities = 237/307 (77%), Positives = 273/307 (88%), Gaps = 1/307 (0%) Query: 1 MRIVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQ 60 MRIV+ALGGNALLRRGEP++ADNQRENVR A QIA++A GNELV+AHGNGPQVGLLALQ Sbjct: 1 MRIVIALGGNALLRRGEPLSADNQRENVRTACMQIARIAAGNELVVAHGNGPQVGLLALQ 60 Query: 61 GAAYDKVSPYPLDVLGAETEGMIGYMIEQEMGNLLPFEVPFATILTQVEVDGKDPAFQNP 120 GAAY V YPLDVLGAETEGMIGY+IEQE+GNLLPFEVP AT+LTQVEVD +DPAF+ P Sbjct: 61 GAAYKDVPVYPLDVLGAETEGMIGYIIEQELGNLLPFEVPMATLLTQVEVDPEDPAFKQP 120 Query: 121 TKPIGPVYSREEAERLAAEKGWSIAPDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVI 180 +KPIGPVYSREEAERLA EKGW+IA DGD+FRRVVPSPRPKRIFEIRP+ WLL+KG++VI Sbjct: 121 SKPIGPVYSREEAERLAEEKGWAIAADGDRFRRVVPSPRPKRIFEIRPIGWLLDKGSVVI 180 Query: 181 CAGGGGIPTMYDEAGKKLSGVEAVIDKDLCSSLLAQELVADILIIATDVDAAYVDWGKPT 240 CAGGGGIPT+YD++G +L GVEAVIDKDLCS+LLA++L AD+L+IATDVD AY+DWG P Sbjct: 181 CAGGGGIPTVYDQSG-RLQGVEAVIDKDLCSALLAEQLKADLLVIATDVDGAYLDWGTPQ 239 Query: 241 QKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADIVAITEGKAGTRV 300 Q+ I++AHPD+L+ GFAAGSMGPKVQAA EFAR TG AVIGSL I AI +G+AGTRV Sbjct: 240 QRRISEAHPDQLQSRGFAAGSMGPKVQAACEFARNTGNVAVIGSLEQIEAIIKGQAGTRV 299 Query: 301 STRKAGI 307 S AG+ Sbjct: 300 SLEAAGL 306 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 384 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 307 Length adjustment: 27 Effective length of query: 283 Effective length of database: 280 Effective search space: 79240 Effective search space used: 79240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate GFF269 Psest_0270 (carbamate kinase)
to HMM TIGR00746 (arcC: carbamate kinase (EC 2.7.2.2))
../bin/blast/fastacmd -i /tmp/list.3295.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3295.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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