Align Glucokinase (EC 2.7.1.2) (characterized)
to candidate GFF836 Psest_0850 glucokinase, proteobacterial type
Query= reanno::WCS417:GFF4431 (318 letters) >FitnessBrowser__psRCH2:GFF836 Length = 319 Score = 412 bits (1058), Expect = e-120 Identities = 201/318 (63%), Positives = 238/318 (74%) Query: 1 MKLALVGDIGGTNARFALWRDQELHSIRVHATADHSSPEDAIKVYLKEEGLEIGDIGAVC 60 M+LALVGDIGGTNARFALWRD L S+RV A AD ++PE A++ YL GL G + A C Sbjct: 1 MRLALVGDIGGTNARFALWRDSRLESVRVLAAADFATPEMAVEYYLASLGLAPGSVEAAC 60 Query: 61 LSVAGPVSGDEFKFTNNHWRLSKTAFCKTLQVDELLLVNDFSAMALGMTRLKPDEFRVVC 120 L+ AGPV G++F FTNNHWRL+++ FC LQ+ ELLL+NDF+AMALGMTR+ R++C Sbjct: 61 LACAGPVKGEQFTFTNNHWRLTRSDFCGALQMGELLLINDFAAMALGMTRVGEAGRRMIC 120 Query: 121 EGTPEPLRPAVVIGPGTGLGVGTLLDLGAGRFAALPGEGGHVDLPLSSPRETQLWQHIYT 180 G EP PA+VIGPGTGLGV LL LG G + ALPGEGGHVDLP++ E LWQ ++ Sbjct: 121 AGEAEPDAPALVIGPGTGLGVAGLLPLGGGSWRALPGEGGHVDLPVADAHEAALWQMLFA 180 Query: 181 EIGHVSAETALSGGGLPRLYRAICAVDGHTPVLETPEAITAAGLAGDPVAMEVLDQFSIW 240 ++GHV AE LSGGGL LYR +C V G P L +P +TAA LAGD VA+ L+QF +W Sbjct: 181 QLGHVRAEDVLSGGGLLLLYRTVCTVAGLAPRLASPAEVTAAALAGDHVAVATLEQFCVW 240 Query: 241 LGRVAGNNVLTTGGRGGVYIVGGVIPRFADFFINSGFAKSFADKGCMSDYFKGIPVWLVT 300 LGRVAGNNVLT G RGGVYIVGGV+PRFADFF SGFA+ F KGCMS Y +PVWLVT Sbjct: 241 LGRVAGNNVLTLGARGGVYIVGGVVPRFADFFAASGFARGFTSKGCMSRYLGDVPVWLVT 300 Query: 301 APYSGLTGAGVALEQAFA 318 A + GL GAGVALEQA A Sbjct: 301 AEFPGLEGAGVALEQALA 318 Lambda K H 0.320 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 371 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 318 Length of database: 319 Length adjustment: 27 Effective length of query: 291 Effective length of database: 292 Effective search space: 84972 Effective search space used: 84972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate GFF836 Psest_0850 (glucokinase, proteobacterial type)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.28772.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28772.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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