GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Pseudomonas stutzeri RCH2

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate GFF3155 Psest_3214 phosphate acetyltransferase

Query= BRENDA::C1DQG8
         (712 letters)



>FitnessBrowser__psRCH2:GFF3155
          Length = 698

 Score = 1134 bits (2933), Expect = 0.0
 Identities = 580/695 (83%), Positives = 639/695 (91%), Gaps = 1/695 (0%)

Query: 1   MHTLFLAPTGYAVGLNSISLGLIRALEQAGLKVGFFKPIAQPFPIDQGRERSCLLVERTL 60
           MHT+FLAPTG+  GLNSISLGLIRALE AGLKVGFFKPIAQPFP+DQGRERSC+LVERTL
Sbjct: 1   MHTIFLAPTGFGGGLNSISLGLIRALENAGLKVGFFKPIAQPFPVDQGRERSCILVERTL 60

Query: 61  GRSTPEPILLDQVERHLASGETDLLLEEVVSRYQQAAAGKDVVIVEGMLPTRDSDYSAYL 120
             ++PEP+ L+QVER LA GE DLLLE+VVSRYQQ AAGKDVVIVEGM+PTR+S+Y+  +
Sbjct: 61  KLTSPEPLPLEQVERQLADGEIDLLLEDVVSRYQQVAAGKDVVIVEGMVPTRESNYTQRI 120

Query: 121 NPLLSKSLNAEVILIAVQGGDGLKQLAERIEIQAQLFGGIKSPKVLGAIINKIDSGDGIP 180
           N  L+KSL+AEVILIA QG D LK+LAERIEIQAQL+GG K PKVLG I+NK+ + +G+P
Sbjct: 121 NTQLAKSLDAEVILIAAQGNDSLKRLAERIEIQAQLYGGAKDPKVLGVILNKVKTEEGLP 180

Query: 181 AFVERLKEYLPSLGSTDFQLFGAIPFAEELNALRTRDVAELIGAQVLSAGEADRRRVSKI 240
           AF++ LK++LP LGS DFQL GAIPF+EELNALRTRD+AEL+GAQVL+AGEAD+RRV+KI
Sbjct: 181 AFIDSLKQHLPLLGSADFQLLGAIPFSEELNALRTRDIAELLGAQVLNAGEADQRRVNKI 240

Query: 241 VLCARAVPSTVPLLQPGVLVVTPGDRDDVILAASLASLNGVKLAGLLLCSDFMPDPRIME 300
           VLCARAVP+TV LLQ GVLVVTPGDRDD+ILAASLASLNG KLAGLLLCSDF PDPRI+E
Sbjct: 241 VLCARAVPNTVQLLQSGVLVVTPGDRDDIILAASLASLNGEKLAGLLLCSDFAPDPRILE 300

Query: 301 LCKAALDGGLPVMSVTTGSYDTATNLFALNKETPADDIERATRVTDFIAGHLHPEYLRSR 360
           LCKAALDGGLPVM+V T SYDTA NLF LNKETPADDIERATRVTDFIA HLHPE+L +R
Sbjct: 301 LCKAALDGGLPVMTVETNSYDTANNLFGLNKETPADDIERATRVTDFIAKHLHPEFLHTR 360

Query: 361 CSLPR-ELLLSPPAFRYQLVKSAQEADKRIVLPEGTEPRTIRAAAICQERGIARCVLLAR 419
           CS+PR EL +SP AFRYQLVK AQ+A+KRIVLPEG EPRTIRAAAICQERGIARCVLLA+
Sbjct: 361 CSVPRGELRMSPAAFRYQLVKRAQDANKRIVLPEGNEPRTIRAAAICQERGIARCVLLAK 420

Query: 420 PEEVRAVAREQGITLPDGLEILDPESIRAQYIAPMVKMRQSKGLTPEMADEQLRDTVVLG 479
           PEEV+ VAREQGI+LP  LEILDP+SI  +Y+ PM +MR++KGLTPE A EQL+DTVVLG
Sbjct: 421 PEEVQQVAREQGISLPASLEILDPDSIANRYVEPMCEMRKAKGLTPEDAREQLKDTVVLG 480

Query: 480 TMMLALDEVDGLVSGAVHTTANTIRPALQLIKTAPGYNLVSSVFFMLLPDQVLVYGDCAV 539
           TMMLALDEVDGLVSGAVHTTANTIRPALQLIKTAPGY+LVSSVFFMLLPDQVLVYGDCAV
Sbjct: 481 TMMLALDEVDGLVSGAVHTTANTIRPALQLIKTAPGYSLVSSVFFMLLPDQVLVYGDCAV 540

Query: 540 NPNPSAAELAEIALQSAESAVALGVHPRVAMISYSTGDSGSGAEVDKVREATRIAQERAP 599
           NPNPSA ELAEIALQSAESAVALGV+PRVAMISYSTG SGSGAEV+KV EATRIAQERAP
Sbjct: 541 NPNPSATELAEIALQSAESAVALGVNPRVAMISYSTGSSGSGAEVEKVAEATRIAQERAP 600

Query: 600 GLPIDGPLQYDAASVASVGKQKAPNSPVAGQATVFVFPDLNTGNTTYKAVQRNANCISVG 659
            LPIDGPLQYDAASV SVGKQKAPNS VAGQATVF+FPDLNTGNTTYKAVQRNANC+SVG
Sbjct: 601 ALPIDGPLQYDAASVLSVGKQKAPNSKVAGQATVFIFPDLNTGNTTYKAVQRNANCLSVG 660

Query: 660 PMLQGLAKPVNDLSRGALVDDIVFTIALTALQAAS 694
           PMLQGLAKPVNDLSRGALVDDIVFTIALTALQAA+
Sbjct: 661 PMLQGLAKPVNDLSRGALVDDIVFTIALTALQAAN 695


Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1522
Number of extensions: 68
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 698
Length adjustment: 39
Effective length of query: 673
Effective length of database: 659
Effective search space:   443507
Effective search space used:   443507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)

Align candidate GFF3155 Psest_3214 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.19727.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19727.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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