Align phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) (characterized)
to candidate GFF39 Psest_0039 phosphoglucomutase, alpha-D-glucose phosphate-specific
Query= BRENDA::I6Y2G3 (547 letters) >FitnessBrowser__psRCH2:GFF39 Length = 554 Score = 686 bits (1771), Expect = 0.0 Identities = 353/550 (64%), Positives = 410/550 (74%), Gaps = 14/550 (2%) Query: 7 AGQPAQPEDLVDLPHLVTAYYSIEPDPDDLAQQVAFGTSGHRGSALTGTFNELHILAITQ 66 AG+ P L LP LV YYS PDP D AQQVAFGTSGHRGS+L G+FNE HILA TQ Sbjct: 7 AGRLPDPHTLTHLPRLVARYYSDRPDPSDPAQQVAFGTSGHRGSSLKGSFNEWHILATTQ 66 Query: 67 AIVEYRAAQGTTGPLFIGRDTHGLSEPAWVSALEVLAANQVVAVVDS-------RDRYTP 119 AI +YR +G GPLF+G DTH LSEPA++SALEVLAAN + +D+ YTP Sbjct: 67 AICDYRRQEGIDGPLFMGMDTHALSEPAFISALEVLAANGIETRIDAGCAETGGEPGYTP 126 Query: 120 TPAISHAILTYNRGRTEALADGIVVTPSHNPPSDGGIKYNPPNGGPADTAATTAIAKRAN 179 TPAIS+AIL+YNRGRT LADGIV+TPSHNPP DGG KYNP NGGPADT T I +RAN Sbjct: 127 TPAISNAILSYNRGRTSGLADGIVITPSHNPPGDGGFKYNPTNGGPADTGVTKWIQERAN 186 Query: 180 EILLAR-SMVKRLPLARALR--TAQRHDYLGHYVDDLPNVVDIAAIREAGVRIGADPLGG 236 +L+A VKR+ +AL+ T QR D++ YV L V+D+ AIR +G++ DPLGG Sbjct: 187 ALLVAGLEGVKRMDYRQALKATTTQRFDFIDAYVGGLERVIDLDAIRGSGLKFAVDPLGG 246 Query: 237 ASVDYWGEIAHRHGLDLTVVNPLVDATWRFMTLDTDGKIRMDCSSPDAMAGLIRTMFGNR 296 A V YW IA R GL L V++ +VD T+RFM LD DGKIRMDCSSP AMAGLI N+ Sbjct: 247 AGVHYWPRIAERFGLPLEVLSTVVDPTFRFMRLDWDGKIRMDCSSPHAMAGLIE----NK 302 Query: 297 ERYQIATGNDADADRHGIVTPDEGLLNPNHYLAVAIEYLYTHRPSWPAGIAVGKTVVSSS 356 +R+ +A D D DRHGIVT GL+NPNHYLAVAIEYL+THRP W A +GKT+VSSS Sbjct: 303 DRFDVAFACDTDHDRHGIVTRSGGLMNPNHYLAVAIEYLFTHRPGWSAEAGIGKTLVSSS 362 Query: 357 IIDRVVAGIGRQLVEVPVGFKWFVDGLIGATLGFGGEESAGASFLRRDGSVWTTDKDGII 416 +IDRV AGI R+LVEVPVGFKWFVDGL+ +LGFGGEESAGASFL + G W+TDKDG+I Sbjct: 363 MIDRVAAGIERRLVEVPVGFKWFVDGLMDGSLGFGGEESAGASFLDKQGGAWSTDKDGLI 422 Query: 417 MALLAAEILAVTGATPSQRYHALAGEYGGPCYARIDAPADREQKARLARLSADQVSATEL 476 + LLAAEI AVTG PS+RY AL +G P Y RIDA A+REQKARL +LSA QVSA EL Sbjct: 423 LGLLAAEITAVTGKDPSERYQALTDRFGAPVYQRIDAAANREQKARLGKLSASQVSAKEL 482 Query: 477 AGEPITAKLTTAPGNGAALGGLKVTTANAWFAARPSGTEDVYKIYAESFRGPQHLVEVQQ 536 AG+PIT LT APGNGAA+GGLKV TAN WFAARPSGTEDVYKIYAESF G HL +Q Sbjct: 483 AGQPITRILTEAPGNGAAIGGLKVETANGWFAARPSGTEDVYKIYAESFEGEAHLKRIQA 542 Query: 537 TAREVVDRVI 546 A+ +VD V+ Sbjct: 543 EAKALVDSVL 552 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1048 Number of extensions: 44 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 547 Length of database: 554 Length adjustment: 36 Effective length of query: 511 Effective length of database: 518 Effective search space: 264698 Effective search space used: 264698 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate GFF39 Psest_0039 (phosphoglucomutase, alpha-D-glucose phosphate-specific)
to HMM TIGR01132 (pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific (EC 5.4.2.2))
../bin/blast/fastacmd -i /tmp/list.15947.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15947.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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