Align Glucokinase (EC 2.7.1.2) (characterized)
to candidate GFF1854 Psest_1893 glucokinase, proteobacterial type
Query= reanno::WCS417:GFF4431 (318 letters) >FitnessBrowser__psRCH2:GFF1854 Length = 320 Score = 395 bits (1016), Expect = e-115 Identities = 195/314 (62%), Positives = 233/314 (74%) Query: 1 MKLALVGDIGGTNARFALWRDQELHSIRVHATADHSSPEDAIKVYLKEEGLEIGDIGAVC 60 M ALVGDIGGTNARFALWRDQ + IRV TAD++SPE AI+ YL+E + + AVC Sbjct: 1 MSTALVGDIGGTNARFALWRDQRIEQIRVLPTADYASPELAIRAYLREVDQPLDALEAVC 60 Query: 61 LSVAGPVSGDEFKFTNNHWRLSKTAFCKTLQVDELLLVNDFSAMALGMTRLKPDEFRVVC 120 L+ AGPV GD F+FTNNHW+LS+ AFC+ L V ELLL+NDF+AMALGMTRL E VC Sbjct: 61 LACAGPVGGDLFRFTNNHWQLSREAFCRELGVKELLLINDFTAMALGMTRLHDGERITVC 120 Query: 121 EGTPEPLRPAVVIGPGTGLGVGTLLDLGAGRFAALPGEGGHVDLPLSSPRETQLWQHIYT 180 +G PEP RP +VIGPGTGLGV LL L G + ALPGEGGH+ LP+ S RE +W H++ Sbjct: 121 QGEPEPGRPRLVIGPGTGLGVAGLLPLSGGGWRALPGEGGHICLPIGSEREAAIWAHLHR 180 Query: 181 EIGHVSAETALSGGGLPRLYRAICAVDGHTPVLETPEAITAAGLAGDPVAMEVLDQFSIW 240 GHV+AE LSG GL LYRA CA+DG ++P AIT A LAGD A VL+QF W Sbjct: 181 SQGHVNAEAVLSGPGLLTLYRACCALDGQQVEFDSPAAITKAALAGDAYATAVLEQFCRW 240 Query: 241 LGRVAGNNVLTTGGRGGVYIVGGVIPRFADFFINSGFAKSFADKGCMSDYFKGIPVWLVT 300 LGR+ G+NVLT G RGGVYIVGGV+PRFA+ F+ SGF+++ +KG MS YF +PVWLVT Sbjct: 241 LGRIVGDNVLTLGARGGVYIVGGVVPRFAEMFLRSGFSEALREKGQMSRYFDRLPVWLVT 300 Query: 301 APYSGLTGAGVALE 314 APY GL GAGVAL+ Sbjct: 301 APYPGLEGAGVALQ 314 Lambda K H 0.320 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 379 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 318 Length of database: 320 Length adjustment: 28 Effective length of query: 290 Effective length of database: 292 Effective search space: 84680 Effective search space used: 84680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate GFF1854 Psest_1893 (glucokinase, proteobacterial type)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))
../bin/blast/fastacmd -i /tmp/list.2732.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2732.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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