Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate GFF946 Psest_0975 triosephosphate isomerase
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__psRCH2:GFF946 Length = 251 Score = 235 bits (600), Expect = 6e-67 Identities = 123/250 (49%), Positives = 165/250 (66%), Gaps = 2/250 (0%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60 MR P+V GNWK+NG+R V ELV +LR + V+ +A+ P +++ + H+ Sbjct: 1 MRRPMVAGNWKMNGTRASVAELVESLRMQALPVS-VEIAVFPSCLHVAQVLGGVDSKHVA 59 Query: 61 LGAQNVDL-NLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 +GAQ+ N GA TGE SA ++G +++++GHSERR E+DE++++KF + Sbjct: 60 VGAQDCAAQNGFGALTGEVSAEQFAEVGCEWVLVGHSERRLVLGETDEVVSRKFLAAQVG 119 Query: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 GL PVLC+GET E EAG+T EV RQ+ VL G A FE AVIAYEPVWAIG+G +AT Sbjct: 120 GLKPVLCLGETLEEREAGRTLEVVGRQLAQVLDDHGIAVFESAVIAYEPVWAIGSGLTAT 179 Query: 180 PAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239 P QAQ VH IR+ +++ D +A V + YGGSV A NAAELF+ DIDG LVGGASLKA Sbjct: 180 PEQAQEVHAAIREQLSRQDRQVAAGVRLLYGGSVKADNAAELFSMADIDGGLVGGASLKA 239 Query: 240 DAFAVIVKAA 249 + F I +AA Sbjct: 240 NEFGAICRAA 249 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 180 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 251 Length adjustment: 24 Effective length of query: 231 Effective length of database: 227 Effective search space: 52437 Effective search space used: 52437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate GFF946 Psest_0975 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.504.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.504.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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