Align Methylisocitrate lyase (EC 4.1.3.30) (characterized)
to candidate GFF2276 Psest_2321 methylisocitrate lyase
Query= reanno::pseudo6_N2E2:Pf6N2E2_6061 (294 letters) >FitnessBrowser__psRCH2:GFF2276 Length = 297 Score = 531 bits (1368), Expect = e-156 Identities = 272/294 (92%), Positives = 281/294 (95%) Query: 1 MSNSTPGQRFRDAVANEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLG 60 M+ + GQRFRDAVA+EHPLQVVG INANHALLAKRAGFKAIYLSGGGVAAGSLG+PDLG Sbjct: 1 MTLPSAGQRFRDAVASEHPLQVVGAINANHALLAKRAGFKAIYLSGGGVAAGSLGLPDLG 60 Query: 61 ITGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGA 120 ITGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGA Sbjct: 61 ITGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGA 120 Query: 121 KRCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEA 180 KRCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGL SALDRAAACIEA Sbjct: 121 KRCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLNSALDRAAACIEA 180 Query: 181 GADMIFPEAITELEMYKLFASRVKAPILANITEFGATPLYTTEQLAGADVSLVLYPLSAF 240 GADMIFPEAITEL MYK FA RVKAPILANITEFGATPLYTTE+LA DVSLVLYPLSAF Sbjct: 181 GADMIFPEAITELAMYKTFADRVKAPILANITEFGATPLYTTEELASVDVSLVLYPLSAF 240 Query: 241 RAMNKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK 294 RAMNKAAENVYTA+RRDGTQ+NVIDTMQTRMELYDRI+YH FEQ LD+LFA KK Sbjct: 241 RAMNKAAENVYTALRRDGTQKNVIDTMQTRMELYDRINYHAFEQHLDSLFAQKK 294 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 353 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 297 Length adjustment: 26 Effective length of query: 268 Effective length of database: 271 Effective search space: 72628 Effective search space used: 72628 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate GFF2276 Psest_2321 (methylisocitrate lyase)
to HMM TIGR02317 (prpB: methylisocitrate lyase (EC 4.1.3.30))
../bin/blast/fastacmd -i /tmp/list.10566.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10566.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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