Align 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) (characterized)
to candidate PfGW456L13_4584 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
Query= BRENDA::Q6SJB9 (125 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4584 Length = 130 Score = 115 bits (287), Expect = 3e-31 Identities = 52/120 (43%), Positives = 74/120 (61%) Query: 3 ERYDNGMKVRRRVLGDAYVDRAEAGKTAFEAPFQTLITEGAWGTVWASDGISDRERSMLT 62 +RYD GMKVRR VLGDA+VDR+ T F + FQ +IT AWG +W +G+ RS++T Sbjct: 5 QRYDEGMKVRRAVLGDAHVDRSLTTLTEFNSEFQEMITRHAWGDIWTREGLPRHTRSLIT 64 Query: 63 LALLAALGNFDEIPMHIRATARTGASKQDVLEAFQHVAIYAGVPRANQALKLARQTYDEM 122 +A+L + E+ +H+RA A G S+ ++ E AIY G+P AN LA +DE+ Sbjct: 65 IAMLIGMNREGELKLHLRAAANNGVSRGEIKEVIMQSAIYCGIPAANATFHLAESVWDEL 124 Lambda K H 0.318 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 66 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 125 Length of database: 130 Length adjustment: 14 Effective length of query: 111 Effective length of database: 116 Effective search space: 12876 Effective search space used: 12876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)
Align candidate PfGW456L13_4584 (4-carboxymuconolactone decarboxylase (EC 4.1.1.44))
to HMM TIGR02425 (pcaC: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44))
../bin/blast/fastacmd -i /tmp/list.13060.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13060.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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