Align Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 (characterized)
to candidate PfGW456L13_2989 Agmatinase (EC 3.5.3.11)
Query= SwissProt::Q7X3P1 (306 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2989 Length = 319 Score = 322 bits (826), Expect = 6e-93 Identities = 158/280 (56%), Positives = 204/280 (72%), Gaps = 6/280 (2%) Query: 31 YSSD---ADWVITGVPFDMATSGRAGTRHGPGAIRQISTNLAWEGHRWPWHFDMRERLKV 87 YS D D ++GVPFD ATS R G R GP IR S +AWE H WPW FD + L V Sbjct: 36 YSRDLRGVDVAVSGVPFDTATSNRPGARFGPRGIRAASAGIAWERH-WPWTFDPFDHLAV 94 Query: 88 VDCGDLVFNFGDAQDMSDKLQAHTEKLLAAGKRCLTFGGDHFVTLPLLRAHAKHFGKMAL 147 +D GD F++G Q + ++AH E +L AG LTFGGDHF+T PLL+AHA+ G ++L Sbjct: 95 IDYGDCDFDYGSPQSTPEMIEAHAEHILNAGTAMLTFGGDHFITYPLLKAHARKHGALSL 154 Query: 148 VHFDAHTDTYAN--GSKFDHGTMFYHAPNEGLIDPQHSVQIGIRTEHDTNNGFTVLDAAQ 205 +HFDAH+DT+ + G + DHGTMF+HA EGL+DP SVQIG+RT +D + GF VLDA Q Sbjct: 155 IHFDAHSDTWPDEEGKRIDHGTMFWHAAREGLVDPSRSVQIGLRTTNDDHQGFEVLDARQ 214 Query: 206 VNDRGVDDLVAQIKEIVGSLPVYLTFDIDCLDPAFAPGTGTPVVGGLTTDKALKMLRALQ 265 V+ RG + +V I+ VG PVYLTFDIDCLDPAFAPGTGTPV GGL+T +AL++L L+ Sbjct: 215 VHRRGCEAIVEAIRARVGDNPVYLTFDIDCLDPAFAPGTGTPVCGGLSTVQALEILGGLR 274 Query: 266 PLNIVGMDLVEVSPAYDQSDITALAGATIALDMLYLQAAK 305 +N+VGMD+VEV+PAYD ++IT+LA AT+A++ML L AA+ Sbjct: 275 GINLVGMDVVEVAPAYDSAEITSLAAATLAMEMLCLYAAR 314 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 341 Number of extensions: 16 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 306 Length of database: 319 Length adjustment: 27 Effective length of query: 279 Effective length of database: 292 Effective search space: 81468 Effective search space used: 81468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate PfGW456L13_2989 (Agmatinase (EC 3.5.3.11))
to HMM TIGR01230 (speB: agmatinase (EC 3.5.3.11))
../bin/blast/fastacmd -i /tmp/list.18234.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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