Align Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate PfGW456L13_1873 Ornithine carbamoyltransferase (EC 2.1.3.3)
Query= SwissProt::P08308 (336 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1873 Length = 336 Score = 617 bits (1591), Expect = 0.0 Identities = 300/336 (89%), Positives = 320/336 (95%) Query: 1 MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRT 60 MAFN+HNRNLLSL HH+ RELRYLLDLSRDLKRAKYTGTEQQHLK NIALIFEKTSTRT Sbjct: 1 MAFNIHNRNLLSLEHHTPRELRYLLDLSRDLKRAKYTGTEQQHLKGNNIALIFEKTSTRT 60 Query: 61 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK Sbjct: 61 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120 Query: 121 FAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKL 180 FAGVPVFNGLTDEYHPTQM+ADVLTMREH+DKP+H+ISYAYLGDARNNMGNSLLLIGAKL Sbjct: 121 FAGVPVFNGLTDEYHPTQMIADVLTMREHADKPIHEISYAYLGDARNNMGNSLLLIGAKL 180 Query: 181 GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEP 240 GMDVRI APKALWP D+ VA+CK++ EESGA++TLTEDPK AVKGVDF+HTDVWVSMGEP Sbjct: 181 GMDVRICAPKALWPADDLVARCKQYGEESGARITLTEDPKAAVKGVDFIHTDVWVSMGEP 240 Query: 241 VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGI 300 VEAW ERI++LLPYQVN E+MKATGNPR KFMHCLPAFHN +TKVGKQIAEQYP L+NGI Sbjct: 241 VEAWAERIQQLLPYQVNAELMKATGNPRTKFMHCLPAFHNCDTKVGKQIAEQYPYLSNGI 300 Query: 301 EVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI 336 EVT+DVFESP IAFEQAENRMHTIKAILVSTLAD+ Sbjct: 301 EVTDDVFESPACIAFEQAENRMHTIKAILVSTLADL 336 Lambda K H 0.318 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 481 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 336 Length of database: 336 Length adjustment: 28 Effective length of query: 308 Effective length of database: 308 Effective search space: 94864 Effective search space used: 94864 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate PfGW456L13_1873 (Ornithine carbamoyltransferase (EC 2.1.3.3))
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.14359.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14359.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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