Align Carbamate kinase; EC 2.7.2.2 (characterized, see rationale)
to candidate PfGW456L13_1872 Carbamate kinase (EC 2.7.2.2)
Query= uniprot:P13982 (310 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1872 Length = 309 Score = 511 bits (1317), Expect = e-150 Identities = 253/310 (81%), Positives = 283/310 (91%), Gaps = 1/310 (0%) Query: 1 MRIVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQ 60 MRIVVALGGNALLRRGEPMTADNQR N+RIA EQIAK+ PGN+LVIAHGNGPQVGLL+LQ Sbjct: 1 MRIVVALGGNALLRRGEPMTADNQRANIRIATEQIAKIHPGNQLVIAHGNGPQVGLLSLQ 60 Query: 61 GAAYDKVSPYPLDVLGAETEGMIGYMIEQEMGNLLPFEVPFATILTQVEVDGKDPAFQNP 120 AAY VSPYPLDVLGAETEGMIGY+IEQE+GNLL FEVPFAT+LTQVEVD DPAF+NP Sbjct: 61 AAAYTSVSPYPLDVLGAETEGMIGYIIEQELGNLLDFEVPFATLLTQVEVDANDPAFKNP 120 Query: 121 TKPIGPVYSREEAERLAAEKGWSIAPDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVI 180 TKPIGPVY++EEAE LAAEKGW+IAPDGDK+RRVV SP+PKRIFEIRP+KWLLEK +IVI Sbjct: 121 TKPIGPVYTKEEAEALAAEKGWAIAPDGDKYRRVVASPKPKRIFEIRPIKWLLEKSSIVI 180 Query: 181 CAGGGGIPTMYDEAGKKLSGVEAVIDKDLCSSLLAQELVADILIIATDVDAAYVDWGKPT 240 CAGGGGIPTMY G KL GVEAVIDKDLCS+LLA++L AD+L+IATDV+AA++D+GKPT Sbjct: 181 CAGGGGIPTMYTSPG-KLEGVEAVIDKDLCSALLAEQLEADLLVIATDVNAAFIDFGKPT 239 Query: 241 QKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADIVAITEGKAGTRV 300 QKAIAQAHPDE+E+LGFAAGSMGPKVQAA EFAR TGK AVIGSL+DI AI +GKAGTR+ Sbjct: 240 QKAIAQAHPDEMEKLGFAAGSMGPKVQAACEFARHTGKVAVIGSLSDIEAIVQGKAGTRI 299 Query: 301 STRKAGIEYR 310 ST GI Y+ Sbjct: 300 STATPGISYQ 309 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 399 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 309 Length adjustment: 27 Effective length of query: 283 Effective length of database: 282 Effective search space: 79806 Effective search space used: 79806 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate PfGW456L13_1872 (Carbamate kinase (EC 2.7.2.2))
to HMM TIGR00746 (arcC: carbamate kinase (EC 2.7.2.2))
../bin/blast/fastacmd -i /tmp/list.3080.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3080.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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