Align acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10); propanal dehydrogenase (CoA-propanoylating) (EC 1.2.1.87) (characterized)
to candidate PfGW456L13_2505 Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol
Query= BRENDA::Q79AF6 (304 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2505 Length = 302 Score = 465 bits (1197), Expect = e-136 Identities = 223/299 (74%), Positives = 262/299 (87%) Query: 1 MTKKIKCALIGPGNIGTDLLAKLQRSPVLEPIWMVGIDPESDGLKRAREMGIKTTADGVD 60 M+KK++ A+IGPGNIGTDLL K+ RS +EP+WMVG+DP+S+GLKRAREMGIKTTA GVD Sbjct: 1 MSKKLRAAIIGPGNIGTDLLMKMCRSQWIEPVWMVGVDPDSEGLKRAREMGIKTTAGGVD 60 Query: 61 GLIPHMQADGVQIVFDATSAYVHADNSRKVNALGALMIDLTPAAIGPFCVPTVNLKEHVG 120 GL+PH+ D ++I FDATSAYVHA+NSRK+N LG +MIDLTPAAIGP+CVP VNLKEH Sbjct: 61 GLLPHVLDDDIRIAFDATSAYVHAENSRKLNELGVIMIDLTPAAIGPYCVPPVNLKEHAS 120 Query: 121 KGEMNVNMVTCGGQATIPMVAAVSRVQPVAYGEIVATVSSKSAGPGTRKNIDEFTRTTAG 180 MNVNMVTCGGQATIPMVAAVSRVQPV+YGEIVATVSS S GPGTR+NIDEFTRTTAG Sbjct: 121 SLAMNVNMVTCGGQATIPMVAAVSRVQPVSYGEIVATVSSGSVGPGTRQNIDEFTRTTAG 180 Query: 181 AVEKVGGAKKGKAIIILNPAEPPLIMRDTVHCLLESEPDQAKITESIHAMIKEVQKYVPG 240 AVEK+GGA++GKAII++NPAEPPL+MRDT+HCL + EP+Q I S+ M++EVQ+YVPG Sbjct: 181 AVEKIGGARRGKAIIVINPAEPPLMMRDTIHCLTDDEPNQDAIRTSVLEMVREVQRYVPG 240 Query: 241 YKLVNGPVFDGLRVSVYLEVEGLGDYLPKYAGNLDIMTAAAARTAEMFAEEILAGQLTL 299 YKL+NGPVFDG +VS+++EVEGLGD+LPK AGNLDIMTAA RTAEMFAEE G L L Sbjct: 241 YKLINGPVFDGRKVSIFIEVEGLGDFLPKSAGNLDIMTAAGLRTAEMFAEEAHKGTLQL 299 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 347 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 304 Length of database: 302 Length adjustment: 27 Effective length of query: 277 Effective length of database: 275 Effective search space: 76175 Effective search space used: 76175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate PfGW456L13_2505 (Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.8742.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8742.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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