Align N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (characterized)
to candidate PfGW456L13_4830 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Query= reanno::pseudo13_GW456_L13:PfGW456L13_4830 (368 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4830 Length = 368 Score = 743 bits (1917), Expect = 0.0 Identities = 368/368 (100%), Positives = 368/368 (100%) Query: 1 MSEDNILTAHGWVRGRLVHEHGKVVSIEGQPCDPADNDLPYLLPGFIDLHVHGGGGKDIM 60 MSEDNILTAHGWVRGRLVHEHGKVVSIEGQPCDPADNDLPYLLPGFIDLHVHGGGGKDIM Sbjct: 1 MSEDNILTAHGWVRGRLVHEHGKVVSIEGQPCDPADNDLPYLLPGFIDLHVHGGGGKDIM 60 Query: 61 EGAPAFETITRTHVRFGTTSLLATTMTAPSEEISSVLQAVGEFCELRPQGCARVLGVHLE 120 EGAPAFETITRTHVRFGTTSLLATTMTAPSEEISSVLQAVGEFCELRPQGCARVLGVHLE Sbjct: 61 EGAPAFETITRTHVRFGTTSLLATTMTAPSEEISSVLQAVGEFCELRPQGCARVLGVHLE 120 Query: 121 GPYINPGKLGAQPNFAHTALMAEVEAYLALAPIRVITIAPEIAGHDTLIRDLSSRGIRMQ 180 GPYINPGKLGAQPNFAHTALMAEVEAYLALAPIRVITIAPEIAGHDTLIRDLSSRGIRMQ Sbjct: 121 GPYINPGKLGAQPNFAHTALMAEVEAYLALAPIRVITIAPEIAGHDTLIRDLSSRGIRMQ 180 Query: 181 IGHTLGSYEEGVAALEAGASSFTHLYNAMSPLHHREPGIVGAALAHAKYAELIPDLLHVH 240 IGHTLGSYEEGVAALEAGASSFTHLYNAMSPLHHREPGIVGAALAHAKYAELIPDLLHVH Sbjct: 181 IGHTLGSYEEGVAALEAGASSFTHLYNAMSPLHHREPGIVGAALAHAKYAELIPDLLHVH 240 Query: 241 PGAIRVALRSIPCLYCVTDSTAAAGMPDGEYKLGSHTVTKCLGGVRLPDGTLAGSTLTMD 300 PGAIRVALRSIPCLYCVTDSTAAAGMPDGEYKLGSHTVTKCLGGVRLPDGTLAGSTLTMD Sbjct: 241 PGAIRVALRSIPCLYCVTDSTAAAGMPDGEYKLGSHTVTKCLGGVRLPDGTLAGSTLTMD 300 Query: 301 QALRNLVKIGLPIAEASQRLSQFPADYLGITERGRLQPGAWADCVRLDRSLKLTAVMVEG 360 QALRNLVKIGLPIAEASQRLSQFPADYLGITERGRLQPGAWADCVRLDRSLKLTAVMVEG Sbjct: 301 QALRNLVKIGLPIAEASQRLSQFPADYLGITERGRLQPGAWADCVRLDRSLKLTAVMVEG 360 Query: 361 EDIDFKNA 368 EDIDFKNA Sbjct: 361 EDIDFKNA 368 Lambda K H 0.320 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 690 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 368 Length of database: 368 Length adjustment: 30 Effective length of query: 338 Effective length of database: 338 Effective search space: 114244 Effective search space used: 114244 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate PfGW456L13_4830 (N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))
../bin/blast/fastacmd -i /tmp/list.9374.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9374.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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