Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12)
Query= BRENDA::Q1PAG1 (608 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1889 Length = 608 Score = 1114 bits (2881), Expect = 0.0 Identities = 561/607 (92%), Positives = 586/607 (96%) Query: 1 MHPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCGSEDKHSL 60 MHPRVLEVTERL+ARSRATREAYLALIRGAASDGP RGKLQCANFAHGVAGCGS+DKHSL Sbjct: 1 MHPRVLEVTERLIARSRATREAYLALIRGAASDGPMRGKLQCANFAHGVAGCGSDDKHSL 60 Query: 61 RMMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGEA 120 RMMN+AN+AIVSSYNDMLSAHQPYE FPE IKKALRE+GSVGQFAGGTPAMCDGVTQGE Sbjct: 61 RMMNSANIAIVSSYNDMLSAHQPYEVFPELIKKALREIGSVGQFAGGTPAMCDGVTQGEP 120 Query: 121 GMELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGGP 180 GMELSLPSREVIALSTAVALSHNMFD AL+LGICDKIVPGLMMGALRFGHLP IFVPGGP Sbjct: 121 GMELSLPSREVIALSTAVALSHNMFDGALLLGICDKIVPGLMMGALRFGHLPMIFVPGGP 180 Query: 181 MPSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLH 240 M SGISNK+KADVRQ+YAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLH Sbjct: 181 MVSGISNKQKADVRQKYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLH 240 Query: 241 LPGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGGS 300 LPGASFVNP TPLRDALT EAA QVTRLTKQ+G+F PIGEIVDERSLVNSIVALHATGGS Sbjct: 241 LPGASFVNPNTPLRDALTREAAHQVTRLTKQNGDFMPIGEIVDERSLVNSIVALHATGGS 300 Query: 301 TNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIREL 360 TNHTLHMPAIA AAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGM+FLIREL Sbjct: 301 TNHTLHMPAIAMAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMSFLIREL 360 Query: 361 LEAGLLHEDVNTVAGRGLSRYTQEPFLDNGKLVWRDGPIESLDENILRPVARAFSPEGGL 420 LEAGLLHE+VNTV G GLSRYTQEPFLDNG+LVWR+G +SLDE+ILRPVARAFS EGGL Sbjct: 361 LEAGLLHENVNTVMGHGLSRYTQEPFLDNGQLVWREGVTDSLDESILRPVARAFSAEGGL 420 Query: 421 RVMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEKDFVAVMRFQGPR 480 RVMEGNLGRGVMKVSAVA+++QIVEAPA+VFQDQQDLADAFKAG LEKDFVAVMRFQGPR Sbjct: 421 RVMEGNLGRGVMKVSAVAVENQIVEAPAMVFQDQQDLADAFKAGLLEKDFVAVMRFQGPR 480 Query: 481 SNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVRD 540 SNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEA VGGALARV++ Sbjct: 481 SNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAYVGGALARVQE 540 Query: 541 GDIIRVDGVKGTLELKVDADEFAAREPAKGLLGNNVGSGRELFGFMRMAFSSAEQGASAF 600 GDIIRVDGVKGTLELKVDA+EFAAR PAKGLLGNN+G+GRELFGFMRMAFSSAEQGASAF Sbjct: 541 GDIIRVDGVKGTLELKVDAEEFAARTPAKGLLGNNIGTGRELFGFMRMAFSSAEQGASAF 600 Query: 601 TSALENL 607 TSALE L Sbjct: 601 TSALETL 607 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1341 Number of extensions: 44 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 608 Length of database: 608 Length adjustment: 37 Effective length of query: 571 Effective length of database: 571 Effective search space: 326041 Effective search space used: 326041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate PfGW456L13_1889 (Phosphogluconate dehydratase (EC 4.2.1.12))
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.19832.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19832.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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