Align acetyl-CoA C-acyltransferase (EC 2.3.1.16) (characterized)
to candidate PfGW456L13_4040 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Query= BRENDA::P28790 (391 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4040 Length = 391 Score = 751 bits (1938), Expect = 0.0 Identities = 373/391 (95%), Positives = 384/391 (98%) Query: 1 MSLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWG 60 MSLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISK+LERN KVDP EVEDVIWG Sbjct: 1 MSLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNVKVDPNEVEDVIWG 60 Query: 61 CVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVG 120 CVNQTLEQGWNIARMASLMTQIPHTSA QTVSRLCGSSMSALHTAAQAIMTGNGDVFVVG Sbjct: 61 CVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVG 120 Query: 121 GVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLA 180 GVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGI+REQQDAF VRSHQLA Sbjct: 121 GVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLA 180 Query: 181 HKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAG 240 HKATVEGKFKDEIIPMQGYDENGFLK FDYDETIRP+TTLESLAALKPAFNPKGGTVTAG Sbjct: 181 HKATVEGKFKDEIIPMQGYDENGFLKTFDYDETIRPETTLESLAALKPAFNPKGGTVTAG 240 Query: 241 TSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAG 300 TSSQITDGASCMIVMSAQRA+DLG++PLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAG Sbjct: 241 TSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAG 300 Query: 301 LNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTL 360 L ++DIDF ELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTL Sbjct: 301 LGISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTL 360 Query: 361 LNVMKQNGGTFGLSTMCIGLGQGIATVFERV 391 LNVMKQNGGTFG++TMCIGLGQGI+TVFERV Sbjct: 361 LNVMKQNGGTFGVATMCIGLGQGISTVFERV 391 Lambda K H 0.318 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 681 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 391 Length of database: 391 Length adjustment: 31 Effective length of query: 360 Effective length of database: 360 Effective search space: 129600 Effective search space used: 129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PfGW456L13_4040 (3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9))
to HMM TIGR02445 (fadA: acetyl-CoA C-acyltransferase FadA (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.24856.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24856.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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