Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate PfGW456L13_5091 Triosephosphate isomerase (EC 5.3.1.1)
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5091 Length = 247 Score = 231 bits (589), Expect = 1e-65 Identities = 123/246 (50%), Positives = 163/246 (66%), Gaps = 2/246 (0%) Query: 5 LVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQ 64 +V GNWK++G+R V EL++ LR +LA + VA+ PP ++I+ EG I +GAQ Sbjct: 1 MVAGNWKMHGTRASVAELINGLR-DLALPSSVDVAVFPPFLHINQVIEGLEGKSISVGAQ 59 Query: 65 NVDLNLS-GAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTP 123 N + GA TGE + + L D G +++GHSERR E D ++ +KFA + GLTP Sbjct: 60 NSAVESGQGALTGEVAPSQLVDAGCSLVLVGHSERRQILGEQDAVLIRKFAAAQACGLTP 119 Query: 124 VLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQA 183 VLCIGET + EAGKT EV +RQ+ ++++ G AF AVIAYEPVWAIGTG +ATP QA Sbjct: 120 VLCIGETLEQREAGKTLEVVSRQLGSIIEELGVGAFAKAVIAYEPVWAIGTGLTATPQQA 179 Query: 184 QAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFA 243 Q VH IR +A ++ +A+ V + YGGSV A+NA ELF PDIDG L+GGASL AD F Sbjct: 180 QDVHAAIRAQLAAENSEVAQGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFG 239 Query: 244 VIVKAA 249 I +AA Sbjct: 240 AICRAA 245 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 187 Number of extensions: 9 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 247 Length adjustment: 24 Effective length of query: 231 Effective length of database: 223 Effective search space: 51513 Effective search space used: 51513 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate PfGW456L13_5091 (Triosephosphate isomerase (EC 5.3.1.1))
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.24174.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24174.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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