Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate PfGW456L13_2872 Acetoacetyl-CoA synthetase (EC 6.2.1.16)
Query= BRENDA::Q9Z3R3 (650 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2872 Length = 651 Score = 705 bits (1820), Expect = 0.0 Identities = 359/646 (55%), Positives = 440/646 (68%), Gaps = 5/646 (0%) Query: 7 LWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAVWEHCKV-IGE 65 LW PD + + ++ M F + +R DY A H WS+ +R FW A+ + + E Sbjct: 5 LWQPDAKRIGKTRMEAFRRFINQRHHLKIDDYPALHQWSIDQRPDFWQAIVDFFDIRFHE 64 Query: 66 SGEKALVDGDRMLDARFFPEARLNFAENLLRKTGSGDALIFRGEDKVSYRLTWDELRALV 125 + L++G RM A++FP A LNFAE+LL++ A+I GE+ LTW EL V Sbjct: 65 QPDAVLLEGPRMPSAQWFPGATLNFAEHLLQRRDDAIAVIAVGENGQREHLTWAELAEQV 124 Query: 126 SRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVLDRFGQ 185 + Q L A G+G GDRVAA MPN +T+ MLAT S+GAIWS SPDFG QGV+DRFGQ Sbjct: 125 AGFQNGLIAAGVGVGDRVAACMPNTWQTLVAMLATTSLGAIWSCSSPDFGTQGVVDRFGQ 184 Query: 186 IAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGA--PTVIVPYAGDSAALAPT-VEGGVT 242 I PK+ + C GY Y GK D +KV + + L + ++VPYA A + + VT Sbjct: 185 IEPKVLVTCAGYRYAGKEIDQTAKVNEILQRLPSLQQLIVVPYARPQAHIEEFHTQANVT 244 Query: 243 LADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFHCGL 302 L D G F +PF HPLYIL+SSGTTGVPKCI+HS GG LLQH+KEH H L Sbjct: 245 LWDDFYE-PGGEPDFVPVPFAHPLYILYSSGTTGVPKCIIHSTGGVLLQHVKEHGLHGDL 303 Query: 303 RDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVFGTS 362 GERLFY+TTCGWMMWNWL S LA G+++ LYDGSPF P+ L D ER +VFGTS Sbjct: 304 GPGERLFYYTTCGWMMWNWLVSALATGSSVVLYDGSPFQPEPQRLIDLIDDERISVFGTS 363 Query: 363 AKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGGTDI 422 KY+ + G P +HDLSSL+ + TGS LSP + FVY K DV LAS+SGGTDI Sbjct: 364 PKYLATLESSGIKPRESHDLSSLKTLLCTGSALSPHSYDFVYRDFKADVCLASMSGGTDI 423 Query: 423 VSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMFWND 482 VSCFV GNP+ PV RGEI G LG+AV+VWNDEG PV GEKGELVCTR FP+MP+ WND Sbjct: 424 VSCFVNGNPMSPVRRGEIMGKSLGMAVEVWNDEGHPVIGEKGELVCTRHFPAMPIGLWND 483 Query: 483 PDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTAEIYNQVEQ 542 PDG K R +YF F VW GD+AE PHGG++IHGRSDA LNPGGVRIGTAEIY QVE+ Sbjct: 484 PDGEKLRKSYFSLFPGVWAQGDYAEQLPHGGMMIHGRSDAVLNPGGVRIGTAEIYRQVEK 543 Query: 543 MDEVAEALCIGQDWEDDVRVVLFVRLARGVELTEALTREIKNRIRSGASPRHVPAKIIAV 602 + +V + + IGQ W+DDVRVVLFVRL G+EL EAL ++I+ IR+ +PRHVPAKI+AV Sbjct: 544 VPQVLDCVAIGQQWQDDVRVVLFVRLRDGLELDEALQQQIRQVIRANTTPRHVPAKIVAV 603 Query: 603 ADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALDLFAGLEEL 648 DIPRT SGK+VELAVR+VVHG+ VKN +ALANPEAL+ F EL Sbjct: 604 TDIPRTISGKVVELAVRNVVHGQKVKNTDALANPEALEQFRDRPEL 649 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1377 Number of extensions: 67 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 651 Length adjustment: 38 Effective length of query: 612 Effective length of database: 613 Effective search space: 375156 Effective search space used: 375156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)
Align candidate PfGW456L13_2872 (Acetoacetyl-CoA synthetase (EC 6.2.1.16))
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.10746.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10746.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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