Align Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 (characterized)
to candidate PfGW456L13_2428 Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF
Query= SwissProt::O33469 (439 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2428 Length = 441 Score = 752 bits (1941), Expect = 0.0 Identities = 364/426 (85%), Positives = 394/426 (92%) Query: 11 LLDPMETASVDALRQHQLERLRWSLKHAYDNVPLYRQRFAECGAHPDDLTCLEDLAKFPF 70 +LDP+ETAS+D LRQHQLERLRWSL HAY+NVPLYRQRF G HPDD+ L+DLAKFPF Sbjct: 13 VLDPLETASIDELRQHQLERLRWSLNHAYNNVPLYRQRFDALGVHPDDIKSLDDLAKFPF 72 Query: 71 TGKNDLRDNYPYGMFAVPQEEVVRLHASSGTTGKPTVVGYTQNDINTWANVVARSIRAAG 130 T K+DLRDNYPYGMFAVP ++VRLHASSGTTGKPTVVGYTQNDI+TWANVVARSIRAAG Sbjct: 73 TTKSDLRDNYPYGMFAVPMHDIVRLHASSGTTGKPTVVGYTQNDIDTWANVVARSIRAAG 132 Query: 131 GRKGDKVHVSYGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLIRDFQPDIIMVTP 190 G +GDKVH+SYGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLI+DFQPDIIMVTP Sbjct: 133 GHRGDKVHISYGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLIKDFQPDIIMVTP 192 Query: 191 SYMLNLADEIERQGIDPHDLKLRLGIFGAEPWTDELRRSIEQRLGINALDIYGLSEIMGP 250 SYMLN+ADEIERQGIDPH L LRLGIFGAEPWT ELR +IE R+GI ALDIYGLSEIMGP Sbjct: 193 SYMLNIADEIERQGIDPHKLALRLGIFGAEPWTAELRSAIEARMGITALDIYGLSEIMGP 252 Query: 251 GVAMECIETKDGPTIWEDHFYPEIIDPVTGEVLPDGQLGELVFTSLSKEALPMVRYRTRD 310 GVAMEC ETKDGPTIWEDHFYPEIIDPVTGEVLPDGQ+GELVFTSLSKEALPM+RYRTRD Sbjct: 253 GVAMECAETKDGPTIWEDHFYPEIIDPVTGEVLPDGQMGELVFTSLSKEALPMIRYRTRD 312 Query: 311 LTRLLPGTARPMRRIGKITGRSDDMLIIRGVNVFPTQIEEQVLKIKQLSEMYEIHLYRNG 370 LTRLLPGTARPMRRI KITGRSDDMLIIRGVNVFPTQIEEQVLK+KQL+E YEIHLYRNG Sbjct: 313 LTRLLPGTARPMRRIDKITGRSDDMLIIRGVNVFPTQIEEQVLKVKQLAECYEIHLYRNG 372 Query: 371 NLDSVEVHVELRAECQHLDEGQRKLVIGELSKQIKTYIGISTQVHLQACGTLKRSEGKAC 430 NLDSV+VHVEL+AE QHL + Q+K V GELS+ IKTYIGIS+++ LQ ++KRSEGKAC Sbjct: 373 NLDSVDVHVELKAEHQHLGDEQQKAVCGELSRHIKTYIGISSRIVLQPFHSIKRSEGKAC 432 Query: 431 HVYDKR 436 HV DKR Sbjct: 433 HVVDKR 438 Lambda K H 0.320 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 788 Number of extensions: 18 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 439 Length of database: 441 Length adjustment: 32 Effective length of query: 407 Effective length of database: 409 Effective search space: 166463 Effective search space used: 166463 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate PfGW456L13_2428 (Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF)
to HMM TIGR02155 (paaF: phenylacetate-CoA ligase (EC 6.2.1.30))
../bin/blast/fastacmd -i /tmp/list.22011.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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