Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate PfGW456L13_1089 L-serine dehydratase (EC 4.3.1.17)
Query= reanno::pseudo3_N2E3:AO353_15500 (458 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1089 Length = 458 Score = 718 bits (1854), Expect = 0.0 Identities = 358/458 (78%), Positives = 399/458 (87%) Query: 1 MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALFDQGLLEQTRRVEVRLYGSLSATGVG 60 MAISVFDLFK+GIGPSSSHTVGPMRAAA F Q L ++GLLEQ RRVEV+L+GSLSATG+G Sbjct: 1 MAISVFDLFKIGIGPSSSHTVGPMRAAALFVQGLRERGLLEQVRRVEVQLFGSLSATGIG 60 Query: 61 HATDRACVMGLMGEWPDSIDPSCIGPRIQQLRESGELLLAGRRSIAFDWQRDLLLLDESL 120 H +D A +MGLMGEWPD+IDPS IG I LRE+ LLL GR + F W RD+ L+DE+L Sbjct: 61 HGSDNAVIMGLMGEWPDAIDPSQIGICIANLRETDTLLLDGRLPVPFIWGRDMRLIDENL 120 Query: 121 PYHPNAMSLTAFGESGQLWEQTYYSVGGGFIVEAAEAESGVPASSDVVLPYEFSSAVELL 180 P+HPNAM+L G+ G+L TYYSVGGGF+V+ A+A SGV VLPY+FSSA ELL Sbjct: 121 PFHPNAMTLIVEGDDGELHRDTYYSVGGGFVVDEAQASSGVVDLDSTVLPYDFSSAAELL 180 Query: 181 SLCNQHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPR 240 LC +H LRV+ELMMANER WRS+ EIRSGL+ +W M++CVEQGL+HEGILPGGL+V R Sbjct: 181 ELCKKHNLRVAELMMANERVWRSEDEIRSGLMKLWRAMQDCVEQGLKHEGILPGGLNVRR 240 Query: 241 RAAKLHRSLLEIGKPNVISSTLSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAV 300 RAAKLHRSL E+ KPNVI STLSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAV Sbjct: 241 RAAKLHRSLQELNKPNVIGSTLSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAV 300 Query: 301 LHYYMKFNPDASDDDVVAFFLAAASVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAD 360 LHY+MKF+ +D +VV +FL AA+VGILCKKNASISGAEVGCQGEVGSACAMAAAGLA+ Sbjct: 301 LHYFMKFSEAVTDANVVDYFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE 360 Query: 361 VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK 420 +LGATPEQL NAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINA QMALRGDG+ Sbjct: 361 ILGATPEQLCNAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINAAQMALRGDGQ 420 Query: 421 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVSWVEC 458 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVS VEC Sbjct: 421 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVSAVEC 458 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 687 Number of extensions: 25 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 458 Length of database: 458 Length adjustment: 33 Effective length of query: 425 Effective length of database: 425 Effective search space: 180625 Effective search space used: 180625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate PfGW456L13_1089 (L-serine dehydratase (EC 4.3.1.17))
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))
../bin/blast/fastacmd -i /tmp/list.14302.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14302.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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