Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate PfGW456L13_1867 L-serine dehydratase (EC 4.3.1.17)
Query= reanno::pseudo6_N2E2:Pf6N2E2_5557 (458 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1867 Length = 458 Score = 861 bits (2225), Expect = 0.0 Identities = 432/458 (94%), Positives = 443/458 (96%) Query: 1 MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRRDDLLNCTTSVKVELYGSLGATGKG 60 MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRR++LL T VKVELYGSLGATGKG Sbjct: 1 MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRRENLLEATACVKVELYGSLGATGKG 60 Query: 61 HGSDKAVLLGLEGEHPDTVDTETVDARLQAIRSSGRLNLLGEHSIEFNEKLHLAMIRKPL 120 HGSDKAVLLGLEGEHPDTVDTETV ARLQ IR +GRLNLLGEH I FNEK HLAMIRKPL Sbjct: 61 HGSDKAVLLGLEGEHPDTVDTETVAARLQEIRGNGRLNLLGEHCIAFNEKEHLAMIRKPL 120 Query: 121 AFHPNGMIFRAFDAAGLQVRSREYYSVGGGFVVDEGAAGADRIVEDATPLTFPFKSAKDL 180 A+HPNGMIFRAFDAAGLQ+RSREYYSVGGGFVVDE AAGADRIVEDATPLTFPFKSAKDL Sbjct: 121 AYHPNGMIFRAFDAAGLQIRSREYYSVGGGFVVDEDAAGADRIVEDATPLTFPFKSAKDL 180 Query: 181 LGHCSTYGLSISQVMLTNESAWRPEAETRAGLLKIWQVMQDCVAAGCRNEGILPGGLKVK 240 LGHC YGLSISQVMLTNESAWRPEAETRAGLLKIWQVMQDCVAAGCRNEGILPGGLKVK Sbjct: 181 LGHCVKYGLSISQVMLTNESAWRPEAETRAGLLKIWQVMQDCVAAGCRNEGILPGGLKVK 240 Query: 241 RRAAALHRQLCKNPEAALRDPLSVLDWVNLYALAVNEENAYGGRVVTAPTNGAAGIIPAV 300 RRAAALHRQLCKNPE++LRDPLSVLDWVNLYALAVNEENA GGRVVTAPTNGAAGIIPAV Sbjct: 241 RRAAALHRQLCKNPESSLRDPLSVLDWVNLYALAVNEENANGGRVVTAPTNGAAGIIPAV 300 Query: 301 LHYYMRFIPGASEDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE 360 LHYYMRFIPG+++DGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE Sbjct: 301 LHYYMRFIPGSNDDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE 360 Query: 361 VLGGSVQQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMAMRGDGH 420 VLGGSVQQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMA+RGDG Sbjct: 361 VLGGSVQQVENAAEIGMEHNLGLTCDPIGGLVQVPCIERNAMGSVKAINAVRMALRGDGQ 420 Query: 421 HFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC 458 HFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC Sbjct: 421 HFVSLDKVIRTMRQTGADMKSKYKETARGGLAVNIIEC 458 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 881 Number of extensions: 29 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 458 Length of database: 458 Length adjustment: 33 Effective length of query: 425 Effective length of database: 425 Effective search space: 180625 Effective search space used: 180625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate PfGW456L13_1867 (L-serine dehydratase (EC 4.3.1.17))
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))
../bin/blast/fastacmd -i /tmp/list.19374.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19374.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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