Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate PfGW456L13_4954 L-serine dehydratase (EC 4.3.1.17)
Query= reanno::pseudo13_GW456_L13:PfGW456L13_4954 (458 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4954 Length = 458 Score = 914 bits (2363), Expect = 0.0 Identities = 458/458 (100%), Positives = 458/458 (100%) Query: 1 MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALVDHGFLADVRRVEIRLYGSLSATGVG 60 MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALVDHGFLADVRRVEIRLYGSLSATGVG Sbjct: 1 MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALVDHGFLADVRRVEIRLYGSLSATGVG 60 Query: 61 HATDRACVMGLMGEWPDRIDPTTIDSRIHTLRETGKLCLAGVAQIAFDWQRDLLLLDESL 120 HATDRACVMGLMGEWPDRIDPTTIDSRIHTLRETGKLCLAGVAQIAFDWQRDLLLLDESL Sbjct: 61 HATDRACVMGLMGEWPDRIDPTTIDSRIHTLRETGKLCLAGVAQIAFDWQRDLLLLDESL 120 Query: 121 PYHPNAMSLTAFGETGELFEQTYYSVGGGFIIEAAEAESGIAPAGDVVLPYDFSSAAELL 180 PYHPNAMSLTAFGETGELFEQTYYSVGGGFIIEAAEAESGIAPAGDVVLPYDFSSAAELL Sbjct: 121 PYHPNAMSLTAFGETGELFEQTYYSVGGGFIIEAAEAESGIAPAGDVVLPYDFSSAAELL 180 Query: 181 KLCNEHGLRVGELMMANERAWRSDAEIRQGLLHIWSVMRECVEQGLRHEGILPGGLSVPR 240 KLCNEHGLRVGELMMANERAWRSDAEIRQGLLHIWSVMRECVEQGLRHEGILPGGLSVPR Sbjct: 181 KLCNEHGLRVGELMMANERAWRSDAEIRQGLLHIWSVMRECVEQGLRHEGILPGGLSVPR 240 Query: 241 RAAKLHRSLQEIGKPNVITSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIIPAV 300 RAAKLHRSLQEIGKPNVITSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIIPAV Sbjct: 241 RAAKLHRSLQEIGKPNVITSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIIPAV 300 Query: 301 LHYYMKFNADASDDDVVAFFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE 360 LHYYMKFNADASDDDVVAFFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE Sbjct: 301 LHYYMKFNADASDDDVVAFFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE 360 Query: 361 VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK 420 VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK Sbjct: 361 VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK 420 Query: 421 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVNWVEC 458 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVNWVEC Sbjct: 421 HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVNWVEC 458 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 763 Number of extensions: 18 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 458 Length of database: 458 Length adjustment: 33 Effective length of query: 425 Effective length of database: 425 Effective search space: 180625 Effective search space used: 180625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate PfGW456L13_4954 (L-serine dehydratase (EC 4.3.1.17))
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))
../bin/blast/fastacmd -i /tmp/list.27488.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27488.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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