Align UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (characterized)
to candidate PfGW456L13_4006 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Query= BRENDA::O25363 (273 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4006 Length = 277 Score = 367 bits (942), Expect = e-106 Identities = 172/270 (63%), Positives = 221/270 (81%) Query: 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKR 60 MI+KCLFPAAGYGTRFLP TK++PKEMLPIV+KPLIQY VEEA +AG + MAIVTGR KR Sbjct: 1 MIRKCLFPAAGYGTRFLPATKSMPKEMLPIVNKPLIQYGVEEARDAGLQHMAIVTGRGKR 60 Query: 61 SLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG 120 +LED+FD SYE+EHQI+GT+KEN L R +++ C FSY RQ +MKGLGHAIL+G LIG Sbjct: 61 ALEDHFDISYELEHQIRGTDKENYLNGTRELMDTCTFSYTRQVEMKGLGHAILSGRPLIG 120 Query: 121 NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEE 180 +EPFAV+LADDLC++ + VL QM +LY++++CSIVAI+EV ++ KYG+I GE + E Sbjct: 121 DEPFAVVLADDLCLNLEGDGVLSQMIALYKQFRCSIVAIQEVPNDQTHKYGIIAGEQIRE 180 Query: 181 GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKR 240 G+Y + MVEKP EDAPSNLA+IGRYILT DIF+++++T+PGK EIQITDAL QA+ Sbjct: 181 GIYRVNSMVEKPKPEDAPSNLAIIGRYILTADIFDLIADTEPGKGGEIQITDALMKQAQS 240 Query: 241 KRIIAYQFKGKRYDCGSVEGYIEASNAYYK 270 ++AY+F+G R+DCG EGYI+A+N Y+ Sbjct: 241 GCVLAYKFEGHRFDCGGAEGYIDATNFCYE 270 Lambda K H 0.318 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 287 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 277 Length adjustment: 25 Effective length of query: 248 Effective length of database: 252 Effective search space: 62496 Effective search space used: 62496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate PfGW456L13_4006 (UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))
to HMM TIGR01099 (galU: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))
../bin/blast/fastacmd -i /tmp/list.4868.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4868.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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