Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate PfGW456L13_698 Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Query= BRENDA::A0A0H2ZHZ0 (467 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_698 Length = 466 Score = 698 bits (1801), Expect = 0.0 Identities = 337/465 (72%), Positives = 399/465 (85%) Query: 2 MESYDVIVIGAGPGGYNAAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELY 61 M +YDV+++G GPGGYNAAIRAGQLGLK ACVEGR TLGGTCLNVGCMPSKALLHASELY Sbjct: 1 MSTYDVVILGGGPGGYNAAIRAGQLGLKAACVEGRATLGGTCLNVGCMPSKALLHASELY 60 Query: 62 AAASGGEFARLGIRVSPELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGE 121 AA G EFA LGI V P L+L QMMKQKDESV LT+G+EFLFRK+KV WI+GW + G Sbjct: 61 DAAKGAEFANLGIEVKPVLNLNQMMKQKDESVTGLTKGIEFLFRKNKVDWIRGWGHIDGP 120 Query: 122 GRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELAEVPRHLVVI 181 G+V V + GG +L ARDI+IATGSEP PLPGV +DN+RILDSTGAL L EVP+HLVVI Sbjct: 121 GKVTVTDSAGGKTELSARDIIIATGSEPTPLPGVDIDNKRILDSTGALALTEVPKHLVVI 180 Query: 182 GAGVIGLELGSVWRRLGAQVTVLEYLERICPGLDGETARTLQRALTRQGMRFRLGTRVVA 241 GAGVIGLELGSVWRRLGAQVTV+E+L+RICPG+D E +TLQR+L++QG+ F+L ++V + Sbjct: 181 GAGVIGLELGSVWRRLGAQVTVVEFLDRICPGVDIEAGKTLQRSLSKQGLSFKLSSKVTS 240 Query: 242 ARSGEQGVELDLQPAAGGATESLQADYVLVAIGRRPYTEGLGLETVGLASDRRGMLENQG 301 A + GV+L ++PAAGGA E L+ADYVLVAIGRRPYT+GLGLE VGLA+D+RGML N+G Sbjct: 241 ATTSATGVQLSIEPAAGGAAELLEADYVLVAIGRRPYTQGLGLENVGLATDKRGMLANKG 300 Query: 302 QRSAAPGVWVIGDVTSGPMLAHKAEEEAIVCIERIAGHAAEMNAEVIPSVIYTQPEVASV 361 R+ A GVWVIGDVTSGPMLAHKAE+EA+ C+E++ G A E+N +IPSV+YT+PE+ASV Sbjct: 301 HRTEAVGVWVIGDVTSGPMLAHKAEDEAMACVEQMVGKAGEVNYNLIPSVVYTKPELASV 360 Query: 362 GLGEEQLQAARREYKVGRFPFSANSRAKINHESEGFIKILSDARSDQVLGVHMIGPGVSE 421 G EEQL+A R YKVG+FPF+ANSRAKINHE+EGF K+L+D R+D+VLGVH++GP VSE Sbjct: 361 GKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKVLADERTDEVLGVHLVGPSVSE 420 Query: 422 MIGEACVAMEFSASAEDLALTCHPHPTRSEALRQAAMDVHGRAMQ 466 MIGE CVAMEFSASAED+ALTCHPHPTRSEALRQAAM+V G A Q Sbjct: 421 MIGEYCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGMATQ 465 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 776 Number of extensions: 26 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 467 Length of database: 466 Length adjustment: 33 Effective length of query: 434 Effective length of database: 433 Effective search space: 187922 Effective search space used: 187922 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate PfGW456L13_698 (Dihydrolipoamide dehydrogenase (EC 1.8.1.4))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.10322.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10322.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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