Align Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 (characterized)
to candidate Pf1N1B4_4051 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Query= SwissProt::P16100 (741 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4051 Length = 690 Score = 981 bits (2537), Expect = 0.0 Identities = 493/597 (82%), Positives = 543/597 (90%), Gaps = 1/597 (0%) Query: 5 KIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDTQKISD 64 KIIYT TDEAPALATYSLLPI++AFT S+ IAVETRDISLAGR++A+FPE L D + ++D Sbjct: 6 KIIYTFTDEAPALATYSLLPIVEAFTASADIAVETRDISLAGRILASFPEQLGD-KAVAD 64 Query: 65 DLAELGKLATTPDANIIKLPNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTEKDVKA 124 LAELG LA TP+ANIIKLPNISASVPQL+AAIKELQ QG+ LPDYPE +D +K K+ Sbjct: 65 HLAELGDLAVTPEANIIKLPNISASVPQLQAAIKELQAQGFALPDYPETVTSDADKLAKS 124 Query: 125 RYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDNGDFYGS 184 RYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAW+ DSKSHVAHM GDFYGS Sbjct: 125 RYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWAKDSKSHVAHMSTGDFYGS 184 Query: 185 EKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAK 244 EKAALI A +VKIELIA+DG++TVLK KT+VQAGEI+D +VMSKNALR+FIAAEIEDAK Sbjct: 185 EKAALIDAADAVKIELIAQDGTTTVLKEKTTVQAGEILDCAVMSKNALRSFIAAEIEDAK 244 Query: 245 KQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGDLYARI 304 +GVLLSVHLKATMMKVSDPIMFGQIV+EFYKDAL KHA+VL QIGF++NNGIGDLYARI Sbjct: 245 AKGVLLSVHLKATMMKVSDPIMFGQIVAEFYKDALAKHADVLAQIGFNLNNGIGDLYARI 304 Query: 305 KTLPEAKQKEIEADIQAVYAQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMW 364 K LP +Q +IEADIQAVYA RP LAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMW Sbjct: 305 KALPAEQQAQIEADIQAVYAVRPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMW 364 Query: 365 GPDGKLHDTKAVIPDRCYAGVYQVVIEDCKQHGAFDPTTMGSVPNVGLMAQKAEEYGSHD 424 G DG+LHDTKAVIPDRCYA +YQ VIEDCK +GAFDPTTMGSVPNVGLMA+KAEEYGSHD Sbjct: 365 GTDGQLHDTKAVIPDRCYATIYQAVIEDCKANGAFDPTTMGSVPNVGLMAKKAEEYGSHD 424 Query: 425 KTFQIPADGVVRVTDESGKLLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPA 484 KTFQI A+GVVRV+D +G+ LLEQSVEAGDI+RMCQ KDAPIQDWVKLAVNRARA+ TPA Sbjct: 425 KTFQIKANGVVRVSDSAGRTLLEQSVEAGDIFRMCQTKDAPIQDWVKLAVNRARASATPA 484 Query: 485 VFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISVTGN 544 +FWLDP RAHD VI KV+ YLKD+DTSGLDIRI+SPV+A +F+L R REGKDTISVTGN Sbjct: 485 IFWLDPMRAHDGVVIEKVQAYLKDHDTSGLDIRIMSPVDAMKFTLDRTREGKDTISVTGN 544 Query: 545 VLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRW 601 VLRDYLTDLFPIMELGTSAKMLSIVPLM+GGGLFETGAGGSAPKHVQQ LEE +LRW Sbjct: 545 VLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLLEENFLRW 601 Lambda K H 0.315 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1381 Number of extensions: 52 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 741 Length of database: 690 Length adjustment: 39 Effective length of query: 702 Effective length of database: 651 Effective search space: 457002 Effective search space used: 457002 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 55 (25.8 bits)
Align candidate Pf1N1B4_4051 (Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42))
to HMM TIGR00178 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))
../bin/blast/fastacmd -i /tmp/list.20352.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20352.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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