Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate Pf1N1B4_5634 Acetoacetyl-CoA synthetase (EC 6.2.1.16)
Query= BRENDA::Q9Z3R3 (650 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5634 Length = 651 Score = 702 bits (1812), Expect = 0.0 Identities = 357/646 (55%), Positives = 443/646 (68%), Gaps = 5/646 (0%) Query: 7 LWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAVWEHCKV-IGE 65 LW P E + +S M F +R ADY A H WS+ +R AFW A+ + + + Sbjct: 5 LWQPGTERIGKSRMEAFRRSINQRHNLKIADYPALHQWSIDQREAFWQAIVDFFDIRFHD 64 Query: 66 SGEKALVDGDRMLDARFFPEARLNFAENLLRKTGSGDALIFRGEDKVSYRLTWDELRALV 125 + L++G +M A++FP A LNFAE+LLR+ A++ GE+ +LTW EL + V Sbjct: 65 QPDAVLIEGAQMPSAQWFPGATLNFAEHLLRRRDDAVAVVAIGENGQREQLTWAELASHV 124 Query: 126 SRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVLDRFGQ 185 + Q L+A G+G GDRVAA MPN +T+ MLAT S+GAIWS SPDFG GV+DRFGQ Sbjct: 125 AGFQNGLKAAGVGLGDRVAACMPNTWQTLVAMLATTSLGAIWSCSSPDFGTHGVIDRFGQ 184 Query: 186 IAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGA--PTVIVPYAGDSAALAP-TVEGGVT 242 I PK+ I C GY Y GK D +KV + L + ++VPYA A + + VT Sbjct: 185 IEPKVLITCAGYRYAGKEIDQTAKVNEILGQLPSLQQLIVVPYARPQARIEDFRSQANVT 244 Query: 243 LADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFHCGL 302 L D G F +PF HPLYIL+SSGTTGVPKCIVHS GG LLQH+KEH H L Sbjct: 245 LWDDFYD-PGGEPQFIPVPFAHPLYILYSSGTTGVPKCIVHSTGGVLLQHVKEHGLHTDL 303 Query: 303 RDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVFGTS 362 G+RLFY+TTCGWMMWNWL S LAV + + LYDGSPF P L D ER VFGTS Sbjct: 304 GPGDRLFYYTTCGWMMWNWLVSALAVDSAVVLYDGSPFHPGPERLIDLIDDERINVFGTS 363 Query: 363 AKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGGTDI 422 K++ A+ G P +HDLSSL+ + STGS LSP+ F +VY K D+ L+S+SGGTDI Sbjct: 364 PKFLTALESNGLKPCDSHDLSSLKTVLSTGSALSPQSFDYVYRAFKSDLCLSSMSGGTDI 423 Query: 423 VSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMFWND 482 VSCFV+GNP+ PV RGE+Q GLG+AV+VWND G PV GEKGELVCTR FP+MP+ W+D Sbjct: 424 VSCFVIGNPVLPVRRGEMQCKGLGMAVEVWNDAGTPVIGEKGELVCTRHFPAMPIGLWHD 483 Query: 483 PDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTAEIYNQVEQ 542 PDG K R +YF F VW GD+AE PHGG++IHGRSDA LNPGGVRIGTAEIY QVE+ Sbjct: 484 PDGEKLRKSYFSLFPGVWAQGDYAEQLPHGGLLIHGRSDAVLNPGGVRIGTAEIYRQVEK 543 Query: 543 MDEVAEALCIGQDWEDDVRVVLFVRLARGVELTEALTREIKNRIRSGASPRHVPAKIIAV 602 + +V +++ IGQ W+DDVRVVLFV+L GVEL EAL ++I+ IR+ +PRHVPAKI+AV Sbjct: 544 IPQVLDSVAIGQQWQDDVRVVLFVKLRDGVELDEALQQQIRQVIRANTTPRHVPAKIVAV 603 Query: 603 ADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALDLFAGLEEL 648 DIPRT SGK+VELAVR+VVHG+ VKN +ALANPEAL+ F EL Sbjct: 604 TDIPRTISGKVVELAVRNVVHGQKVKNTDALANPEALEQFRDRPEL 649 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1363 Number of extensions: 63 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 651 Length adjustment: 38 Effective length of query: 612 Effective length of database: 613 Effective search space: 375156 Effective search space used: 375156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)
Align candidate Pf1N1B4_5634 (Acetoacetyl-CoA synthetase (EC 6.2.1.16))
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.20598.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20598.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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