Align acetyl-CoA C-acetyltransferase (EC 2.3.1.16) (characterized)
to candidate Pf1N1B4_5835 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Query= metacyc::MONOMER-20831 (393 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5835 Length = 393 Score = 674 bits (1739), Expect = 0.0 Identities = 337/393 (85%), Positives = 371/393 (94%) Query: 1 MQDVVIVAATRTAVGSFQGSLASIPAPELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAG 60 MQ+VVIVAATRTA+GSFQGSLA++ A +LGAAVIR+LL QTGLDPAQVDEVI+GQVLTAG Sbjct: 1 MQEVVIVAATRTAIGSFQGSLANVSAVDLGAAVIRQLLAQTGLDPAQVDEVIMGQVLTAG 60 Query: 61 SGQNPARQASILAGLPHAVPSLTLNKVCGSGLKALHLGAQAIRCGDAEVIIAGGMENMSL 120 +GQNPARQA+I AGLP AVP++TLNKVCGSGLKALHL AQAIRCGDAEVIIAGG ENMSL Sbjct: 61 AGQNPARQAAIKAGLPFAVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSL 120 Query: 121 APYVLPAARTGLRMGHAKMIDSMITDGLWDAFNDYHMGITAENLVDKYGISREAQDAFAA 180 + YV+P ARTGLRMGHA+++D+MI+DGLWDAFNDYHMGITAENL +KY ++RE QDAFAA Sbjct: 121 SNYVMPGARTGLRMGHAQIVDTMISDGLWDAFNDYHMGITAENLAEKYSLTREQQDAFAA 180 Query: 181 ASQQKATAAIEAGRFVDEITPILIPQRKGDPVAFAVDEQPRAGTTAESLAKLKPAFKKDG 240 ASQQKA AAIEAGRF DEITPILIPQRKGDP++FA DEQPRAGTTA+SL KLK AFKKDG Sbjct: 181 ASQQKAVAAIEAGRFADEITPILIPQRKGDPLSFATDEQPRAGTTADSLGKLKAAFKKDG 240 Query: 241 SVTAGNASSLNDGAAAVLLMSADKAKALGLPVLARIASYANAGVDPAIMGIGPVSATRRC 300 SVTAGNASSLNDGAAAV+LMSA+KAKALGLPVLA+IA+YANAGVDPAIMGIGPVSATRRC Sbjct: 241 SVTAGNASSLNDGAAAVILMSAEKAKALGLPVLAKIAAYANAGVDPAIMGIGPVSATRRC 300 Query: 301 LDKAGWSLGDLDLIEANEAFAAQSLAVGKELEWDAEKVNVNGGAIAIGHPIGASGCRVLV 360 LDK GWS+G LDLIEANEAFAAQSLAV K+LEWD KVNVNGGAIA+GHPIGASGCRVLV Sbjct: 301 LDKTGWSIGQLDLIEANEAFAAQSLAVAKDLEWDLNKVNVNGGAIALGHPIGASGCRVLV 360 Query: 361 TLLHEMIKRDAKKGLATLCIGGGQGVALALERS 393 TLLHEMIK+DAKKGLATLCIGGGQGVALA+ER+ Sbjct: 361 TLLHEMIKQDAKKGLATLCIGGGQGVALAIERA 393 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 559 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 393 Length of database: 393 Length adjustment: 31 Effective length of query: 362 Effective length of database: 362 Effective search space: 131044 Effective search space used: 131044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Pf1N1B4_5835 (3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9))
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.9294.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9294.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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