Align Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate Pf1N1B4_4477 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)
Query= reanno::pseudo13_GW456_L13:PfGW456L13_3543 (460 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4477 Length = 460 Score = 861 bits (2224), Expect = 0.0 Identities = 435/460 (94%), Positives = 450/460 (97%) Query: 1 MQTLNTTLLIIGGGPGGYVTAIRAGQLGIPTILVEGQSLGGTCLNIGCIPSKALIHVAEQ 60 MQTLNTTLLIIGGGPGGYVTAIRAGQLGI TILVEGQSLGGTCLNIGCIPSKALIHVAEQ Sbjct: 1 MQTLNTTLLIIGGGPGGYVTAIRAGQLGISTILVEGQSLGGTCLNIGCIPSKALIHVAEQ 60 Query: 61 FHQTQHHSQHSALGISVSAPTLDIGKSVEWKDGIVDRLTTGVAALLKKNKVQVVQGWAKV 120 FHQTQHHSQHSALGISVSAPTL+IGKSVEWKDGIVDRLTTGV+ALLKK+KVQV+QGWAKV Sbjct: 61 FHQTQHHSQHSALGISVSAPTLNIGKSVEWKDGIVDRLTTGVSALLKKHKVQVIQGWAKV 120 Query: 121 VDGKTVEVGDTRIQCEHLVLATGSKSVNLPMLPIGGPIISSTEALAPTSVPKRLIVVGGG 180 +DGKTVEVGDTRIQCEHLVLATGSKSVNLPMLPIGGPIISSTEALAPTSVPKRLIVVGGG Sbjct: 121 IDGKTVEVGDTRIQCEHLVLATGSKSVNLPMLPIGGPIISSTEALAPTSVPKRLIVVGGG 180 Query: 181 YIGLELGIAYRKLGAEVSVVEAQERILPAYDAELTQPVHDELKKLGVKLYLKHSVQGFDS 240 YIGLELGIAYRKLGAEVSVVEAQ+RILPAYDAELT PVH+ LK+L VKLYLKHSVQGFDS Sbjct: 181 YIGLELGIAYRKLGAEVSVVEAQDRILPAYDAELTHPVHEALKQLDVKLYLKHSVQGFDS 240 Query: 241 SNNTLQVLAPNGETLNLETDQVLVAVGRKPNTQGWNLEALNLDMNGSSIKIDNRCQTSMR 300 NNTLQV+ P+G++LNL+TDQVLVAVGRKPNTQGWNLEALNLDMNGS+IKIDNRCQTSMR Sbjct: 241 VNNTLQVIDPSGDSLNLKTDQVLVAVGRKPNTQGWNLEALNLDMNGSAIKIDNRCQTSMR 300 Query: 301 NVYAIGDLSGEPMLAHRAMAQGEMVAELISGKTREFNPTAIAAVCFTDPELVVVGKTPDE 360 NVYAIGDLSGEPMLAHRAMAQGEMVAELISGK REFNPTAIAAVCFTDPELVVVGKTPDE Sbjct: 301 NVYAIGDLSGEPMLAHRAMAQGEMVAELISGKHREFNPTAIAAVCFTDPELVVVGKTPDE 360 Query: 361 AKAAGWDCIVSSFPFAANGRAMTLESKSGFVRVVARRDNHVIVGWQAVGVGVSELSTAFA 420 AKAAG DCIVSSFPFAANGRAMTLES+SGFVRVVARRDNHVIVGWQAVGVGVSELSTAF Sbjct: 361 AKAAGLDCIVSSFPFAANGRAMTLESRSGFVRVVARRDNHVIVGWQAVGVGVSELSTAFG 420 Query: 421 QSLEMGARLEDIGGTIHAHPTLGEAVQEAALRALGHALHL 460 QSLEMGARLEDI GTIHAHPTLGEAVQEAALRALGHALHL Sbjct: 421 QSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHL 460 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 765 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 460 Length of database: 460 Length adjustment: 33 Effective length of query: 427 Effective length of database: 427 Effective search space: 182329 Effective search space used: 182329 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate Pf1N1B4_4477 (Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.25218.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25218.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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