Align Methylisocitrate lyase (EC 4.1.3.30) (characterized)
to candidate Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30)
Query= reanno::pseudo6_N2E2:Pf6N2E2_6061 (294 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3819 Length = 296 Score = 560 bits (1444), Expect = e-164 Identities = 287/293 (97%), Positives = 291/293 (99%) Query: 2 SNSTPGQRFRDAVANEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLGI 61 + STPGQRFRDAVA+EHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLGI Sbjct: 4 NKSTPGQRFRDAVASEHPLQVVGTINANHALLAKRAGFKAIYLSGGGVAAGSLGVPDLGI 63 Query: 62 TGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGAK 121 TGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGAK Sbjct: 64 TGLDDVLTDVRRITDVCDLPLLVDVDTGFGSSAFNVARTVKSMIKFGAAAIHIEDQVGAK 123 Query: 122 RCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEAG 181 RCGHRPNKEIV+QQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEAG Sbjct: 124 RCGHRPNKEIVTQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALDRAAACIEAG 183 Query: 182 ADMIFPEAITELEMYKLFASRVKAPILANITEFGATPLYTTEQLAGADVSLVLYPLSAFR 241 ADM+FPEAITELEMYKLFASRVKAPILANITEFGATPLYTTEQLA ADVSLVLYPLSAFR Sbjct: 184 ADMVFPEAITELEMYKLFASRVKAPILANITEFGATPLYTTEQLAAADVSLVLYPLSAFR 243 Query: 242 AMNKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK 294 AMNKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK Sbjct: 244 AMNKAAENVYTAIRRDGTQQNVIDTMQTRMELYDRIDYHTFEQKLDALFAAKK 296 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 378 Number of extensions: 3 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 296 Length adjustment: 26 Effective length of query: 268 Effective length of database: 270 Effective search space: 72360 Effective search space used: 72360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Pf1N1B4_3819 (Methylisocitrate lyase (EC 4.1.3.30))
to HMM TIGR02317 (prpB: methylisocitrate lyase (EC 4.1.3.30))
../bin/blast/fastacmd -i /tmp/list.14002.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14002.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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