Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate Pf1N1B4_5003 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
Query= reanno::pseudo3_N2E3:AO353_26925 (358 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5003 Length = 358 Score = 712 bits (1838), Expect = 0.0 Identities = 349/358 (97%), Positives = 355/358 (99%) Query: 1 MADLYENPMGLMGFEFIELASPTPNTLEPIFEIMGFTKVATHRSKDVHLYRQGQINLILN 60 MADLYENPMGLMGFEFIE ASPTPNTLEPIF+IMGFTKVATHRSKDVHLYRQGQINLILN Sbjct: 1 MADLYENPMGLMGFEFIEFASPTPNTLEPIFQIMGFTKVATHRSKDVHLYRQGQINLILN 60 Query: 61 NEPHSVASYFAAEHGPSVCGMAFRVKDSQKAYKRALELGAQPIHIETGPMELNLPAIKGI 120 NEP+SVASYFAAEHGPSVCGMAFRVKDSQKAYKRALELGAQPIHIETGPMEL+LPAIKGI Sbjct: 61 NEPNSVASYFAAEHGPSVCGMAFRVKDSQKAYKRALELGAQPIHIETGPMELHLPAIKGI 120 Query: 121 GGAPLYLIDRFGEGSSIYDIDFVFIEGVDRHPVGAGLKIIDHLTHNVYRGRMAYWANFYE 180 GGAPLYLIDRFGEGSSIYDIDFVFIEGVDR+PVGAGLKIIDHLTHNVYRGRMAYWANFYE Sbjct: 121 GGAPLYLIDRFGEGSSIYDIDFVFIEGVDRNPVGAGLKIIDHLTHNVYRGRMAYWANFYE 180 Query: 181 KLFNFREIRYFDIKGEYTGLTSKAMTAPDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ 240 KLFNFREIRYFDIKGEYTGLTSKAMTAPDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ Sbjct: 181 KLFNFREIRYFDIKGEYTGLTSKAMTAPDGMIRIPLNEESSKGAGQIEEFLMQFNGEGIQ 240 Query: 241 HVAFLSDDLIKTWDHLKKIGMRFMTAPPDTYYEMLEGRLPNHGEPVNELQARGILLDGSS 300 HVAFLSDDLIKTWDHLK IGMRFMT PPDTYYEMLEGRLPNHGEPVNELQARGILLDGSS Sbjct: 241 HVAFLSDDLIKTWDHLKSIGMRFMTPPPDTYYEMLEGRLPNHGEPVNELQARGILLDGSS 300 Query: 301 EAGDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVLSTE 358 E+GDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVLST+ Sbjct: 301 ESGDKRLLLQIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFESIERDQVRRGVLSTD 358 Lambda K H 0.321 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 685 Number of extensions: 23 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 358 Length of database: 358 Length adjustment: 29 Effective length of query: 329 Effective length of database: 329 Effective search space: 108241 Effective search space used: 108241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_5003 (4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))
../bin/blast/fastacmd -i /tmp/list.6929.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6929.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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