Align fumarylacetoacetase (EC 3.7.1.2) (characterized)
to candidate Pf1N1B4_1024 Fumarylacetoacetase (EC 3.7.1.2)
Query= BRENDA::Q8RW90 (421 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1024 Length = 434 Score = 372 bits (955), Expect = e-107 Identities = 196/416 (47%), Positives = 261/416 (62%), Gaps = 14/416 (3%) Query: 16 FPIQNLPYGVFKPESNSTPRPAVAIGDLVLDLSAISEAGLFDGLILKDADCFLQPNLNKF 75 FP+QNLP GVF + S PR VAIGD + DL A +AGLFDG+ K + LN F Sbjct: 20 FPLQNLPLGVFSVKG-SAPRSGVAIGDHIFDLEAALDAGLFDGVAKKAVEATRGGQLNAF 78 Query: 76 LAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEMIVPMVIGDYTDFFAS 135 +GR A R L + + + K + EM +P I DYTDF+ Sbjct: 79 FELGREARVALRERLIELFKEGSTLHGKIEAQGAKLLPLAADCEMHLPAKINDYTDFYVG 138 Query: 136 MHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDIIRPRGQGHPQGNSEPYF 195 + HA+N G +FR P+N + PN+ +PI YHGRAS+I SGTD+ RP+GQ P G +EP F Sbjct: 139 IEHAQNVGKLFR-PDNPLLPNYKYVPIGYHGRASTIRPSGTDVRRPKGQTLPAGQTEPTF 197 Query: 196 GPSKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDWSARDIQAWEYVPLGPF 255 GP +LD+ELE+ +G GN +G I + +AADHI G L+NDWSARDIQAWEY PLGPF Sbjct: 198 GPCARLDYELELGIWIGQGNAMGDSIAIGDAADHIAGFCLLNDWSARDIQAWEYQPLGPF 257 Query: 256 LGKSFGTTISPWIVTLDALEPFGCQAPKQ---DPPPLPYLAEKE---SVNYDISLEVQLK 309 L KSF T+ISPW+VT +ALEPF P + DP PLPYL +K + +DI LEV L Sbjct: 258 LSKSFITSISPWVVTAEALEPFRRAQPARPEGDPQPLPYLFDKRDQAAGAFDIELEVLLL 317 Query: 310 PSGRDDSCV----ITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGPEPDSYG 365 + + +T SN Q++YWT+ Q +AHH+VNGC L+ GDL G+GT+SGPE +G Sbjct: 318 TESMREQNLPAHRLTLSNTQHMYWTVAQMVAHHSVNGCQLQAGDLFGSGTLSGPENGQFG 377 Query: 366 CLLELTWNGQKPLSL-NGTTQTFLEDGDQVTFSGVCKGDGY-NVGFGTCTGKIVPS 419 LLE+T G+KP+ L +G + FLEDGD++ C +G+ ++GFG C GK++P+ Sbjct: 378 SLLEITEGGKKPIELASGEVRKFLEDGDEIILRARCSREGFASIGFGECRGKVLPA 433 Lambda K H 0.319 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 588 Number of extensions: 35 Number of successful extensions: 7 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 421 Length of database: 434 Length adjustment: 32 Effective length of query: 389 Effective length of database: 402 Effective search space: 156378 Effective search space used: 156378 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Pf1N1B4_1024 (Fumarylacetoacetase (EC 3.7.1.2))
to HMM TIGR01266 (fahA: fumarylacetoacetase (EC 3.7.1.2))
../bin/blast/fastacmd -i /tmp/list.15127.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15127.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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