Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate Pf1N1B4_1164 Triosephosphate isomerase (EC 5.3.1.1)
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1164 Length = 247 Score = 224 bits (571), Expect = 1e-63 Identities = 119/246 (48%), Positives = 161/246 (65%), Gaps = 2/246 (0%) Query: 5 LVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQ 64 +V GNWK++G+R V EL++ L LA +G VA+ PP ++I+ +G I +GAQ Sbjct: 1 MVAGNWKMHGTRASVAELINGLG-HLALPSGVDVAVFPPCLHINQVIDGLKGKSISVGAQ 59 Query: 65 NVDL-NLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTP 123 N + ++ GA TGE + + L D G +++GHSERR E D ++ +KFA + GL P Sbjct: 60 NSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGEQDGMLIRKFAAAQACGLIP 119 Query: 124 VLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQA 183 VLC+GET E EAGKT EV RQ+ ++++ G F AVIAYEPVWAIGTG +A+P QA Sbjct: 120 VLCVGETLEEREAGKTLEVVGRQLGSIIEELGVGVFAKAVIAYEPVWAIGTGLTASPQQA 179 Query: 184 QAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFA 243 Q VH IR +A ++ +A+ V + YGGSV A+NA ELF PDIDG L+GGASL AD F Sbjct: 180 QDVHAAIRAQLAAENSEVAQGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFG 239 Query: 244 VIVKAA 249 I +AA Sbjct: 240 AICRAA 245 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 173 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 247 Length adjustment: 24 Effective length of query: 231 Effective length of database: 223 Effective search space: 51513 Effective search space used: 51513 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate Pf1N1B4_1164 (Triosephosphate isomerase (EC 5.3.1.1))
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.12142.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12142.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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