Align 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 (characterized)
to candidate Pf1N1B4_3823 2-methylcitrate dehydratase (EC 4.2.1.79)
Query= SwissProt::Q937N6 (484 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3823 Length = 494 Score = 594 bits (1532), Expect = e-174 Identities = 303/497 (60%), Positives = 368/497 (74%), Gaps = 16/497 (3%) Query: 1 MSTDTPSAQRPDPDQVLVDIVDYVTRYEIKSGLAYDTARNCLIDTLGCGLEALSYPACTK 60 MS + RPD D VL DI DYV ++I+S A DTARNCL+DTLGCGL AL +P CTK Sbjct: 1 MSANVDLNIRPDYDTVLQDIADYVLNFKIESPEALDTARNCLMDTLGCGLLALRFPECTK 60 Query: 61 LLGPVVPGTIVPNGARVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGG 120 LGP+V GT+VP GARVPGT ++LDPV+AA++IG ++RWLD+NDTWLAAEWGHPSDNLG Sbjct: 61 HLGPIVEGTVVPFGARVPGTSYRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGA 120 Query: 121 ILATADWISRNHIAAGRKPLTMKAVLAAMIKAHEIQGCIALENSFNQVGLDHVVLVKVAS 180 ILA AD +S+ +A G PLT++ VL AMI AHEIQG IALENSFN+VG+DHV+LVKVAS Sbjct: 121 ILAVADHLSQKRLANGDAPLTIRVVLEAMIMAHEIQGVIALENSFNRVGIDHVILVKVAS 180 Query: 181 TAVVAQMLGLTRDEILNAVSLAWVDGQSLRTYRHAPNAGSRKSWAHGDATSRAVRLALIA 240 TAV A+++G R+++L+A+S A+ DGQ+LRTYRHAPNAGSRKSWA GDA+SR VRLA IA Sbjct: 181 TAVAAKLMGANREQLLSALSHAFADGQALRTYRHAPNAGSRKSWAAGDASSRGVRLADIA 240 Query: 241 RTGEMGYPSVLTAKTWGFYDVLFK------------GQPFRFQRPYGTYVMENILLKISY 288 GEMG P VLTAK WGFYDVLF + F F RP+G+YVMEN+L KIS+ Sbjct: 241 MRGEMGIPGVLTAKQWGFYDVLFSHTNNDLALKPEDKRAFSFSRPFGSYVMENVLFKISF 300 Query: 289 PAEFHAQTAVEAAMQLHGALALAGRSAADIAAITIRTHEACLRIIDKLGPLSNPADRDHC 348 PAEFHAQTA EAA+ LH L +I I I THE+ +RII K+GPL+N ADRDHC Sbjct: 301 PAEFHAQTACEAAVTLH---PLVRNRLHEIDRIVITTHESAIRIISKVGPLANAADRDHC 357 Query: 349 IQYMVAVPLLFGRLTAADYEDRI-AADPRIDALRGRITCVEDPALTRDYHDPAKRSIANA 407 IQYM+AVPL+FG L A YED A P ID LR ++ VEDP TR+Y +P KRSIANA Sbjct: 358 IQYMIAVPLVFGNLVAEQYEDDFHAVHPIIDVLRDKMVIVEDPRFTREYLEPDKRSIANA 417 Query: 408 LTVTLADGTVLDEVLVEYPLGHKRRRAEGIPLLVEKFRTNLARRFPPKQQQAILAASLDQ 467 + V DG+ V+VEYP+GH+RRRAEGI LL +KF+ NLA RF ++ I A DQ Sbjct: 418 VQVFFKDGSSTKNVVVEYPIGHRRRRAEGIALLEDKFKANLATRFTAQRSAEIFALCKDQ 477 Query: 468 ARLEAMPVNEYLDMYAI 484 ARLE VN ++D++ I Sbjct: 478 ARLEETAVNRFVDLFVI 494 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 653 Number of extensions: 21 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 484 Length of database: 494 Length adjustment: 34 Effective length of query: 450 Effective length of database: 460 Effective search space: 207000 Effective search space used: 207000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.6 bits)
Align candidate Pf1N1B4_3823 (2-methylcitrate dehydratase (EC 4.2.1.79))
to HMM TIGR02330 (prpD: 2-methylcitrate dehydratase (EC 4.2.1.79))
../bin/blast/fastacmd -i /tmp/list.10280.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10280.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.