GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Pseudomonas fluorescens FW300-N1B4

Align Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 (characterized)
to candidate Pf1N1B4_1055 Phosphate acetyltransferase (EC 2.3.1.8)

Query= SwissProt::P77844
         (329 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1055
          Length = 422

 Score =  266 bits (681), Expect = 5e-76
 Identities = 143/330 (43%), Positives = 206/330 (62%), Gaps = 5/330 (1%)

Query: 1   MSAELFENWLLKRARAEHSHIVLPEGDDDRILMAAHQLLDQDICDITILGDPVKIKERAT 60
           +S  +F   L++RA+A +  IVLPEG +   + AA     + I    +L  P  ++  A 
Sbjct: 92  LSPAVFRYQLIQRAQAANKRIVLPEGSEPLTVQAAAICQARGIARCVLLAKPADVEAVAR 151

Query: 61  ELGLHLNTAYLVNPLTDPRL--EEFAEQFAELRKSKSVTIDEAREIMKDISYFGTMMVHN 118
             G+ L        + DP L  E + E    LRK+KS+    A + ++D    GTMM+  
Sbjct: 152 AQGIELPPGL---EILDPDLIRERYVEPMVALRKTKSLNAPMAEQQLEDTVVIGTMMLAL 208

Query: 119 GDADGMVSGAANTTAHTIKPSFQIIKTVPEASVVSSIFLMVLRGRLWAFGDCAVNPNPTA 178
            + DG+VSG  ++TA+TI+P+ Q+IKT P  ++VSS+F M+    +  +GDC +NP+P+A
Sbjct: 209 DEVDGLVSGVIHSTANTIRPALQLIKTAPGCTLVSSVFFMLFPEEVLVYGDCVMNPHPSA 268

Query: 179 EQLGEIAVVSAKTAAQFGIDPRVAILSYSTGNSGGGSDVDRAIDALAEARRLNPELCVDG 238
            +L EIA+ SA +AA FGI PRVA++SYS+G S  G +V++  +A   A      L +DG
Sbjct: 269 SELAEIALQSADSAAAFGITPRVAMISYSSGESASGEEVEKVREATLLAHEQQNSLLIDG 328

Query: 239 PLQFDAAVDPGVARKKMPDSDVAGQANVFIFPDLEAGNIGYKTAQRTGHALAVGPILQGL 298
           PLQ+DAA +  VAR+  P+S VAG+A VF+FPDL  GN  +K  QR+   +++GP+LQGL
Sbjct: 329 PLQYDAAANETVARQLAPNSQVAGRATVFVFPDLNTGNTTHKAVQRSADCVSLGPMLQGL 388

Query: 299 NKPVNDLSRGATVPDIVNTVAITAIQAGGR 328
            KPVNDL RGA V DIV T+A+TAIQA  R
Sbjct: 389 RKPVNDLPRGAQVDDIVYTIALTAIQAANR 418


Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 332
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 422
Length adjustment: 30
Effective length of query: 299
Effective length of database: 392
Effective search space:   117208
Effective search space used:   117208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate Pf1N1B4_1055 (Phosphate acetyltransferase (EC 2.3.1.8))
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.19402.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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