Align methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized)
to candidate Pf1N1B4_4277 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
Query= BRENDA::G5CZI2 (498 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4277 Length = 500 Score = 618 bits (1594), Expect = 0.0 Identities = 301/496 (60%), Positives = 381/496 (76%), Gaps = 3/496 (0%) Query: 4 IGHLINGQLVT-ENTRSQNVFNPATGEIGKQLDLASTKTVEQAISAAQHAFPTWRNTPPL 62 IGH I+GQ+ + R NVFNPATG I ++ LAS KTV+ A+++A AFP W L Sbjct: 7 IGHYIDGQVQDCGSERFSNVFNPATGSIQARVGLASQKTVDDAVASALKAFPAWSEQSSL 66 Query: 63 KRARVMFRFKELLEQHADEICRLIGEEHGKIAHDAMGELQRGIENVEYACGAPELLKGEH 122 +R+RVMF+FKELL++H +E+ +I EHGK+ DA GE+ RGIE VEYACGAP LLK + Sbjct: 67 RRSRVMFKFKELLDRHHNELAEIISREHGKVFSDAKGEVTRGIEIVEYACGAPNLLKTDF 126 Query: 123 SRNVGPGIDSWSEFQPMGVVAGITPFNFPVMVPLWMFPMAIVCGNCFVLKPSERDPSSTL 182 S N+G GID+W+ QP+GV AG+TPFNFPVMVPLWM P+A+V GNCF+LKPSERDPS++L Sbjct: 127 SDNIGGGIDNWNLRQPLGVCAGVTPFNFPVMVPLWMIPLALVTGNCFILKPSERDPSASL 186 Query: 183 YIAQLLQEAGLPDGVMNVVNGDKEAVDALLHDDRVKAVSFVGSTPIAEYIYRTASANGKR 242 +A+LL EAGLPDGV NVV GDK AVDALL ++A+SFVGSTPIAEYI++ A++ GKR Sbjct: 187 LMAKLLTEAGLPDGVFNVVQGDKAAVDALLQHPDIEAISFVGSTPIAEYIHQQATSRGKR 246 Query: 243 CQALGGAKNHAIVMPDADMDNAVNQLLGAAFGSSGERCMALSVAVAVGDAAGDALVSKMT 302 QALGGAKNH IVMPDAD+D A + L+GAA+GS+GERCMA+S+AV VGD GD L++K+ Sbjct: 247 VQALGGAKNHMIVMPDADLDQAADALIGAAYGSAGERCMAISIAVTVGD-VGDQLIAKLL 305 Query: 303 QAMQKLKVGPSTDSGNDFGPVITRQHQEKVIGYINSAEQQGATIVVDGRQPKVPNHENGF 362 + +LKVG +D GP++T +H+ KV G+I QGA ++VDGR KVP ENGF Sbjct: 306 PRIDQLKVGNGMQGDSDMGPLVTAEHKAKVEGFIGEGVAQGAQLIVDGRNFKVPGAENGF 365 Query: 363 FVGGTLIDHVTPEMTSYQEEIFGPVLQVVRVATMQDAMDLIDAHEYGNGTCIFTRDGEAA 422 FVG TL D+VT EM+ YQ+EIFGPVL +VRV A+ LI+AHE+GNG FT DG A Sbjct: 366 FVGATLFDNVTTEMSIYQQEIFGPVLGIVRVPDFASAVALINAHEFGNGVSCFTSDGGIA 425 Query: 423 RYFSDNIQVGMVGINIPLPVPVAYHSFGGWKRSLFGDLHAYGPDAVRFYTKRKTVTQRWP 482 R F+ NI+VGMVGIN+P+PVP+A+HSFGGWKRSLFGD HAYG + +RFY++ K+V QRWP Sbjct: 426 RSFARNIKVGMVGINVPIPVPMAWHSFGGWKRSLFGDHHAYGEEGIRFYSRYKSVMQRWP 485 Query: 483 SAGVREGAEFSMPTMK 498 + + +G EFSMPT K Sbjct: 486 DS-IAKGPEFSMPTAK 500 Lambda K H 0.319 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 752 Number of extensions: 27 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 498 Length of database: 500 Length adjustment: 34 Effective length of query: 464 Effective length of database: 466 Effective search space: 216224 Effective search space used: 216224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate Pf1N1B4_4277 (Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27))
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.26941.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26941.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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