Align Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 (characterized)
to candidate AO353_04155 AO353_04155 ornithine carbamoyltransferase
Query= SwissProt::Q02047 (306 letters) >FitnessBrowser__pseudo3_N2E3:AO353_04155 Length = 306 Score = 538 bits (1386), Expect = e-158 Identities = 268/306 (87%), Positives = 284/306 (92%) Query: 1 MNARHFLSMMDYTPDELLGLIRRGVELKDLRIRGELFEPLKNRVLGMIFEKSSTRTRLSF 60 M+ARHFLS+MD TP+EL+ +IRRG+ELKDLR RG LFEPLKNRVLGMIFEKSSTRTRLSF Sbjct: 1 MSARHFLSLMDCTPEELVSVIRRGIELKDLRNRGVLFEPLKNRVLGMIFEKSSTRTRLSF 60 Query: 61 EAGMIQLGGQAIFLSHRDTQLGRGEPIADSAKVMSRMLDAVMIRTYAHSNLTEFAANSRV 120 EAGMIQLGGQAIFLS RDTQLGRGEPI D A VMSRMLDAVMIRT+AHS LTEFAANSRV Sbjct: 61 EAGMIQLGGQAIFLSPRDTQLGRGEPIGDCAIVMSRMLDAVMIRTFAHSTLTEFAANSRV 120 Query: 121 PVINGLSDDLHPCQLLADMQTFLEHRGSIKGKTVAWIGDGNNMCNSYIEAAIQFDFQLRV 180 PVINGLSDDLHPCQLLADMQTFLEHRGSI+GKTVAWIGDGNNMCNSYIEAAIQFDFQLR+ Sbjct: 121 PVINGLSDDLHPCQLLADMQTFLEHRGSIQGKTVAWIGDGNNMCNSYIEAAIQFDFQLRI 180 Query: 181 ACPAGYEPNPEFLALAGERVTIVRDPKAAVAGAHLVSTDVWTSMGQEEETARRMALFAPF 240 ACP GYEPNPEF+A AG+RVTIVRDP+ AV GAHLVSTDVWTSMGQEEETA+R+ LFAPF Sbjct: 181 ACPEGYEPNPEFVAKAGDRVTIVRDPREAVRGAHLVSTDVWTSMGQEEETAKRLKLFAPF 240 Query: 241 QVTRASLDLAEKDVLFMHCLPAHRGEEISVDLLDDSRSVAWDQAENRLHAQKALLEFLVA 300 QV RA LDLA DVLFMHCLPAHRGEEIS+DLLDD RSVAWDQAENRLHAQKALLEFLV Sbjct: 241 QVNRALLDLAAADVLFMHCLPAHRGEEISLDLLDDPRSVAWDQAENRLHAQKALLEFLVP 300 Query: 301 PSHQRA 306 PS+ A Sbjct: 301 PSYHHA 306 Lambda K H 0.322 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 370 Number of extensions: 4 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 306 Length of database: 306 Length adjustment: 27 Effective length of query: 279 Effective length of database: 279 Effective search space: 77841 Effective search space used: 77841 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate AO353_04155 AO353_04155 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.20616.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20616.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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