Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate AO353_05480 AO353_05480 1-phosphofructokinase
Query= reanno::pseudo5_N2C3_1:AO356_07330 (313 letters) >FitnessBrowser__pseudo3_N2E3:AO353_05480 Length = 313 Score = 510 bits (1313), Expect = e-149 Identities = 260/313 (83%), Positives = 279/313 (89%) Query: 1 MAKILTLTLNPALDLTVELARLEPGQVNRSDAMHAHAAGKGVNVAQVLADLGHTLTVSGF 60 MAKILTLTLNPALDLTV+L LEPGQVNRSDAMH HAAGKG+NVAQVLADLGH LTVSGF Sbjct: 1 MAKILTLTLNPALDLTVQLPHLEPGQVNRSDAMHTHAAGKGINVAQVLADLGHQLTVSGF 60 Query: 61 LGEDNAQVFETLFAQRGFVDAFIRVPGETRSNIKLAEQDGRITDLNGPGPMVDAAAQQAL 120 LGEDN Q FE LFA+RGFVDAFIRVPGETRSNIKLAE DGRITD+NGPGP+V AAAQQAL Sbjct: 61 LGEDNLQAFEALFAKRGFVDAFIRVPGETRSNIKLAEADGRITDINGPGPVVSAAAQQAL 120 Query: 121 LARLEQIAPGHDVVVVAGSLPRGVSPQWLQALIARMKALGLNVALDTSGEALRVALAAGP 180 L RL+QI GHD VVVAGSLPRGVS QWL L+ R+K+ GL VALDTSGEALR L+AGP Sbjct: 121 LDRLDQITLGHDAVVVAGSLPRGVSAQWLHGLLLRLKSRGLKVALDTSGEALRAGLSAGP 180 Query: 181 WLIKPNTEELADALGCEVVSETAQAQAAQRLHAQGIEHVVISHGADGVNWFSVGAALHAS 240 WLIKPNTEEL++AL CE +S AQA+AA RLHA GIEHVVISHGA+GVNWFSVG+A+HA+ Sbjct: 181 WLIKPNTEELSEALDCEAISVAAQAEAASRLHAHGIEHVVISHGAEGVNWFSVGSAMHAT 240 Query: 241 PPKVSVASTVGAGDSLLAGMLHGLLSADTPEQTLRTATAIAAMAVTQIGFGIHDTALLAS 300 PP+VSV STVGAGDSLLAGMLHGLLSADTPEQTLRTATAIAAMAVTQIGFGI D A LA Sbjct: 241 PPRVSVVSTVGAGDSLLAGMLHGLLSADTPEQTLRTATAIAAMAVTQIGFGIGDAAQLAQ 300 Query: 301 LEQGVRVRPLTEQ 313 LEQ VRVR LTEQ Sbjct: 301 LEQEVRVRLLTEQ 313 Lambda K H 0.317 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 422 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 313 Length of database: 313 Length adjustment: 27 Effective length of query: 286 Effective length of database: 286 Effective search space: 81796 Effective search space used: 81796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate AO353_05480 AO353_05480 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.23243.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23243.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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