Align 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (characterized)
to candidate AO353_05305 AO353_05305 5-dehydro-4-deoxyglucarate dehydratase
Query= reanno::pseudo1_N1B4:Pf1N1B4_1110 (303 letters) >FitnessBrowser__pseudo3_N2E3:AO353_05305 Length = 303 Score = 582 bits (1501), Expect = e-171 Identities = 291/303 (96%), Positives = 300/303 (99%) Query: 1 MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL 60 MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL Sbjct: 1 MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL 60 Query: 61 AASEYSEIIKTAVDTCATSVPILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQ 120 AASEYSE+IKTAVDTCA+SVPILAGVGG+TRQAIEYAQEAERLGAKGLLLLPHYLTEASQ Sbjct: 61 AASEYSEVIKTAVDTCASSVPILAGVGGSTRQAIEYAQEAERLGAKGLLLLPHYLTEASQ 120 Query: 121 DGVAAHVEAVCKSVKIGVVVYNRNVCRLTAPLLERLAERCPNLIGYKDGLGDIELMVSIR 180 DGVAAHVEAVCKSVKIGV+VYNRNVCRLTAPLLERLAERCPNLIGYKDGLGDIELMVSIR Sbjct: 121 DGVAAHVEAVCKSVKIGVIVYNRNVCRLTAPLLERLAERCPNLIGYKDGLGDIELMVSIR 180 Query: 181 RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIAREDHATVGK 240 RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNF+PK AMDFYHAIAR+DHATVGK Sbjct: 181 RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFLPKMAMDFYHAIARDDHATVGK 240 Query: 241 IIDDFFLPYLDIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTGEEYEMLAALIDKQ 300 +IDDFFLPYLDIRNRKAGYAVSIVKAGAKIAGYDAGPVR PLTDLT EE+EMLAAL+DKQ Sbjct: 241 LIDDFFLPYLDIRNRKAGYAVSIVKAGAKIAGYDAGPVRTPLTDLTPEEFEMLAALMDKQ 300 Query: 301 GAQ 303 GAQ Sbjct: 301 GAQ 303 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 482 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 303 Length adjustment: 27 Effective length of query: 276 Effective length of database: 276 Effective search space: 76176 Effective search space used: 76176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate AO353_05305 AO353_05305 (5-dehydro-4-deoxyglucarate dehydratase)
to HMM TIGR03249 (kdgD: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41))
../bin/blast/fastacmd -i /tmp/list.30116.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30116.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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