Align Histidine ammonia-lyase (EC 4.3.1.3) (characterized)
to candidate AO353_17725 AO353_17725 histidine ammonia-lyase
Query= reanno::pseudo1_N1B4:Pf1N1B4_1582 (507 letters) >FitnessBrowser__pseudo3_N2E3:AO353_17725 Length = 512 Score = 903 bits (2333), Expect = 0.0 Identities = 463/512 (90%), Positives = 484/512 (94%), Gaps = 5/512 (0%) Query: 1 MSQAEKIVIADAPLRWQDVVAVARHGAQLELSPQIWTRIENAQAIVQRIVASGERAYGVN 60 MSQA+KIVIADAPLRWQDVVAVARHGA LELS Q W RI+NAQAIVQ IV SGERAYGVN Sbjct: 1 MSQAKKIVIADAPLRWQDVVAVARHGAVLELSAQTWARIDNAQAIVQHIVVSGERAYGVN 60 Query: 61 TGLGALCNVSLKGEQLSQLSRNTLLSHACGVGAPLADEQTRAIICAAIRNYSHGKSGIHR 120 TGLGALCNVSL+GEQLSQLSRNTLLSHACGVGAPL DEQTR+I+CAAI NYSHGKSG+HR Sbjct: 61 TGLGALCNVSLQGEQLSQLSRNTLLSHACGVGAPLTDEQTRSIMCAAIINYSHGKSGLHR 120 Query: 121 RVVEALLALLNRGITPQVPSQGSVGYLTHMAHIGITLLGVGNVSYRGQIVTAQQALSEEG 180 +VVEALLALLNRGITPQVPSQGSVGYLTHMAHIGI+LLGVG VSYRGQIV AQQAL+EEG Sbjct: 121 QVVEALLALLNRGITPQVPSQGSVGYLTHMAHIGISLLGVGQVSYRGQIVPAQQALAEEG 180 Query: 181 LQPVQLGAKDGLCLVNGTPCMTGLSCLAIADATRLVQWADVIGAMSFEAQRGQIAAFDAE 240 L+PVQLGAKDGLCLVNGTPCMTGLSCLA+ADATRL+QWADVIGAMSFEAQRGQI AFDAE Sbjct: 181 LKPVQLGAKDGLCLVNGTPCMTGLSCLALADATRLIQWADVIGAMSFEAQRGQIDAFDAE 240 Query: 241 IIALKPHLGMQQVGINLRALLDGSEVIASSKGIRTQDALSIRSIPQVHGAARDQLEHAKK 300 IIALKPH GMQQVGINLR LLDGSEVIASSKGIRTQDALSIRSIPQVHGAARDQL+HA + Sbjct: 241 IIALKPHPGMQQVGINLRGLLDGSEVIASSKGIRTQDALSIRSIPQVHGAARDQLDHATR 300 Query: 301 QIETELNSVTDNPMLLGTPDNFRVMSQANPHGQSVALAADLLAIAMAEIGSIAERRLDRL 360 QIETELNS TDNP+LLGTPDN+RVMSQANPHGQSVALAADLLAIAMAEIGSIAERRLDRL Sbjct: 301 QIETELNSATDNPLLLGTPDNYRVMSQANPHGQSVALAADLLAIAMAEIGSIAERRLDRL 360 Query: 361 INPHVSGLPAFLVANPGVNSGMMIVQYVAASLCAENRQLAQPAVLDNYVTSGLQEDHLSM 420 INPHVSGLPAFLV+NPGVNSGMMIVQYVAASLCAENRQLAQPAVLDNYVTSGLQEDHLSM Sbjct: 361 INPHVSGLPAFLVSNPGVNSGMMIVQYVAASLCAENRQLAQPAVLDNYVTSGLQEDHLSM 420 Query: 421 GTNAALKLHRALENCTQILAIEYLLAAQAFEFLKEQ-----RFGAGTDTAWRLLRERVPA 475 GTNAALKLHRALENCTQILAIEYLLAAQAFEFLK FGAGT+ AWRLLRERVPA Sbjct: 421 GTNAALKLHRALENCTQILAIEYLLAAQAFEFLKADFLKGPCFGAGTEVAWRLLRERVPA 480 Query: 476 YDQDRWLAPDIAAAAGVLKDPILLHKALPNLN 507 YDQDRWLAPDIA+AA VLKDP LL ALP+L+ Sbjct: 481 YDQDRWLAPDIASAASVLKDPQLLQTALPSLH 512 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 976 Number of extensions: 24 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 507 Length of database: 512 Length adjustment: 34 Effective length of query: 473 Effective length of database: 478 Effective search space: 226094 Effective search space used: 226094 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate AO353_17725 AO353_17725 (histidine ammonia-lyase)
to HMM TIGR01225 (hutH: histidine ammonia-lyase (EC 4.3.1.3))
../bin/blast/fastacmd -i /tmp/list.13347.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13347.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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