GapMind for catabolism of small carbon sources

 

Alignments for a candidate for galU in Pseudomonas fluorescens FW300-N2E3

Align UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (characterized)
to candidate AO353_26975 AO353_26975 UTP--glucose-1-phosphate uridylyltransferase

Query= BRENDA::O25363
         (273 letters)



>FitnessBrowser__pseudo3_N2E3:AO353_26975
          Length = 279

 Score =  368 bits (944), Expect = e-107
 Identities = 174/266 (65%), Positives = 220/266 (82%)

Query: 1   MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKR 60
           MIKKCLFPAAGYGTRFLP TK +PKEMLP+V+KPLIQY VEEA++AG   ++IVTGR KR
Sbjct: 1   MIKKCLFPAAGYGTRFLPATKAMPKEMLPVVNKPLIQYGVEEALDAGLTEISIVTGRGKR 60

Query: 61  SLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG 120
           +LED+FD SYE+E+QI+GT+KE  L  IR ++++C FSY RQ +MKGLGHAILTG  LIG
Sbjct: 61  ALEDHFDISYELENQIKGTDKEKYLVGIRKLLDECSFSYTRQTEMKGLGHAILTGRPLIG 120

Query: 121 NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEE 180
           +EPFAV+LADDLC++ D   VL QM  LY++Y+C+IVAI+EV  +E +KYGVI G+ + +
Sbjct: 121 DEPFAVVLADDLCVNLDGDGVLTQMVKLYKQYRCTIVAIQEVDPQETNKYGVIAGDLIGD 180

Query: 181 GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKR 240
            +Y +++MVEKP  EDAPSNLA+IGRYILTPDIF+++ ET+PGK  EIQITDAL  QA+ 
Sbjct: 181 DLYRVRNMVEKPKPEDAPSNLAIIGRYILTPDIFKLIEETEPGKGGEIQITDALMKQAQD 240

Query: 241 KRIIAYQFKGKRYDCGSVEGYIEASN 266
             +IAY+FKG R+DCG  EGYIEA+N
Sbjct: 241 GCVIAYKFKGTRFDCGGAEGYIEATN 266


Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 279
Length adjustment: 25
Effective length of query: 248
Effective length of database: 254
Effective search space:    62992
Effective search space used:    62992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate AO353_26975 AO353_26975 (UTP--glucose-1-phosphate uridylyltransferase)
to HMM TIGR01099 (galU: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.17985.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17985.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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