Align Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate AO353_26650 AO353_26650 dihydrolipoamide dehydrogenase
Query= reanno::pseudo5_N2C3_1:AO356_22975 (461 letters) >FitnessBrowser__pseudo3_N2E3:AO353_26650 Length = 461 Score = 860 bits (2221), Expect = 0.0 Identities = 433/461 (93%), Positives = 450/461 (97%) Query: 1 MQQTLNTTLLIIGGGPGGYVAAIRAGQLGISTILVEGQALGGTCLNIGCIPSKALIHVAE 60 MQQTLNTTLLIIGGGPGGYVAAIRAGQLGISTILVEGQALGGTCLNIGCIPSKALIHVAE Sbjct: 1 MQQTLNTTLLIIGGGPGGYVAAIRAGQLGISTILVEGQALGGTCLNIGCIPSKALIHVAE 60 Query: 61 QFHQTRHHSQGSALGITVAAPTLDIGKSVEWKDGIVDRLTTGVAALLKKHKVQVIHGWAK 120 QFHQT+HHSQ SALGI V+APTLDIGKSVEWKDGIVDRLTTGVAALLKKHKVQVI GWAK Sbjct: 61 QFHQTQHHSQHSALGINVSAPTLDIGKSVEWKDGIVDRLTTGVAALLKKHKVQVIQGWAK 120 Query: 121 VIDGKTVEVGDTRIQCEHLLLATGSKSVNLPMLPLGGPIISSTEALAPTSVPKHLVVVGG 180 VIDGKTVEVGDTRIQCEHLLLATGSKSVNLPMLP+GGPIISSTEALAP SVPK L+VVGG Sbjct: 121 VIDGKTVEVGDTRIQCEHLLLATGSKSVNLPMLPIGGPIISSTEALAPKSVPKRLIVVGG 180 Query: 181 GYIGLELGIAYRKLGAEVSVVEAQERILPAYDGELTQPVHEALKQLGVKLYLKHSVEGFD 240 GYIGLELGIAYRKLGAEVSVVEAQ+RILPAYD ELTQPV+EALKQLGVKLYLKHSVEGFD Sbjct: 181 GYIGLELGIAYRKLGAEVSVVEAQDRILPAYDAELTQPVNEALKQLGVKLYLKHSVEGFD 240 Query: 241 AQASTLQVRDPNGDTLNLETDRVLVAVGRKPNTQGWNLAALDLAMNGSAVKIDSRCQTSM 300 +QA+TLQVRDPNG+ LNL TD+VLVAVGRKPNTQGWNL AL+L MNGSA+KID+RC TSM Sbjct: 241 SQANTLQVRDPNGEILNLATDQVLVAVGRKPNTQGWNLEALNLDMNGSAIKIDNRCATSM 300 Query: 301 RNVWAIGDLSGEPMLAHRAMAQGEMVAELIAGQHREFNPTAIAAVCFTDPELVVVGKTPD 360 RNVWAIGDLSGEPMLAHRAMAQGEMVAELI+G+HREFNPTAIAAVCFTDPELVVVGKTPD Sbjct: 301 RNVWAIGDLSGEPMLAHRAMAQGEMVAELISGKHREFNPTAIAAVCFTDPELVVVGKTPD 360 Query: 361 EAKAAGLDCLVSSFPFAANGRAMTLESKSGFVRVVARRDNHLIVGWQAVGVGVSELSTAF 420 EAKAAGLDC+VS+FPFAANGRAMTLESKSGFVRVVARRDNHLIVGWQAVGVGVSELSTAF Sbjct: 361 EAKAAGLDCIVSNFPFAANGRAMTLESKSGFVRVVARRDNHLIVGWQAVGVGVSELSTAF 420 Query: 421 GQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHL 461 GQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHL Sbjct: 421 GQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHL 461 Lambda K H 0.318 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 805 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 461 Length of database: 461 Length adjustment: 33 Effective length of query: 428 Effective length of database: 428 Effective search space: 183184 Effective search space used: 183184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate AO353_26650 AO353_26650 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.7957.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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