Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate AO356_04930 AO356_04930 beta-ketoadipyl CoA thiolase
Query= metacyc::MONOMER-3207 (400 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_04930 Length = 400 Score = 715 bits (1846), Expect = 0.0 Identities = 359/400 (89%), Positives = 385/400 (96%) Query: 1 MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQA 60 MRDV+ICDAIRTPIGRFGG L+ VRADDLAAVP+KAL+E NP+V W+ VDEVF GCANQA Sbjct: 1 MRDVYICDAIRTPIGRFGGGLSAVRADDLAAVPIKALMERNPSVDWNAVDEVFLGCANQA 60 Query: 61 GEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM 120 GEDNRNVARMALLLAGLP+SIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM Sbjct: 61 GEDNRNVARMALLLAGLPQSIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM 120 Query: 121 SRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRAD 180 SRAPFVMGKA++ +SRNMKLEDTTIGWRFINPLMK+QYGVD+MP+TADNVADDY VSRAD Sbjct: 121 SRAPFVMGKADTAFSRNMKLEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYAVSRAD 180 Query: 181 QDAFALRSQQKAAAAQAAGFFAEEIVPVRIAHKKGETIVERDEHLRPETTLEALTKLKPV 240 QDAFALRSQQ+ AAAQAAGFFAEEIVPVRIAHKKGET+VE+DEH R +TTLE L+KLKPV Sbjct: 181 QDAFALRSQQRTAAAQAAGFFAEEIVPVRIAHKKGETVVEQDEHPRADTTLETLSKLKPV 240 Query: 241 NGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPVP 300 NGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPR +VLGMAS GVAPRVMGIGPVP Sbjct: 241 NGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRGKVLGMASAGVAPRVMGIGPVP 300 Query: 301 AVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGM 360 AVRKLTERLG+AV+DFDVIELNEAFASQGLAVLR+LG+ADDAPQVNPNGGAIALGHPLGM Sbjct: 301 AVRKLTERLGLAVADFDVIELNEAFASQGLAVLRDLGLADDAPQVNPNGGAIALGHPLGM 360 Query: 361 SGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV 400 SGARLV+TALH LEK+GG+KGLATMCVGVGQGLALAIERV Sbjct: 361 SGARLVMTALHHLEKTGGKKGLATMCVGVGQGLALAIERV 400 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 668 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 400 Length adjustment: 31 Effective length of query: 369 Effective length of database: 369 Effective search space: 136161 Effective search space used: 136161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate AO356_04930 AO356_04930 (beta-ketoadipyl CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.26088.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26088.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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